Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1532
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383           30   1.2  
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    30   1.6  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   4.9  
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    28   4.9  
09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390...    28   6.5  

>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
          Length = 542

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 101 ITDESHINLDKSQKYNYATPIGHG--CSLDPNLIREHFI 211
           +   SH +   +  Y Y  P+GHG  C+  P  IRE ++
Sbjct: 454 VRSPSHTSYAMASPYPYDRPVGHGLYCNQSPPAIREPYV 492


>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 TDESHINLDKSQKYNYATPIGHGCSLDPNLIREH 205
           T ESHIN   S   ++ TP+G    + P   + H
Sbjct: 721 TTESHINPSHSHSLSWDTPLGFSLDVPPGFTKAH 754


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 1   ESSDHVTLPTMSIIKKPSTIIHEGQSREIPLEQNNR*EPHKS**VTKI*LCNTH 162
           +++D +T  T+   +K ST  HE  S +IP + ++  E  +S  ++   LC  H
Sbjct: 352 QATDKLTTSTLEDERKHSTYEHESFSFKIPQDSSSLKESPESCSISAASLCEDH 405


>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 505 NTTHYRANWVPGPPSSRHFIQIFRSFIYR 419
           +  + R N+VPG PS RHF+      ++R
Sbjct: 274 HVNNQRGNFVPGGPSGRHFMSKNMQSVHR 302


>09_04_0723 +
           19736958-19737107,19737979-19738480,19738911-19739061,
           19739659-19739766,19739789-19739818,19739894-19740303,
           19740797-19740882,19740989-19741058,19741413-19741585,
           19741644-19741725,19742131-19742288
          Length = 639

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 245 SKRAIMFVIISTYYIFKSFTNIVTVEAISFCYCPSSKINITLIIY 379
           +++  M VI+  YY  K F  +   +A+ F  C S  +  +L+ Y
Sbjct: 48  ARQVHMAVILYNYYHRKQFPQLAFADAMRFFKCASLTLGDSLLAY 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,223,633
Number of Sequences: 37544
Number of extensions: 290457
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)