Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1532
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 149 NYIFVTYQDLCGSH 108
           ++ ++ Y+ LCG H
Sbjct: 41  HHTYIIYESLCGRH 54


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 149 NYIFVTYQDLCGSH 108
           ++ ++ Y+ LCG H
Sbjct: 41  HHTYIIYESLCGRH 54


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 144 YFCDLSRFMWLSSVILFEWYFARLTLMDYCRRL 46
           + C LS  + +   +++ W+    T+ +  R+L
Sbjct: 533 WLCGLSSMLCIPGYMIYIWFTTSGTISEKFRKL 565


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -3

Query: 144 YFCDLSRFMWLSSVILFEWYFARLTLMDYCRRL 46
           + C LS  + +   +++ W+    T+ +  R+L
Sbjct: 586 WLCGLSSMLCIPGYMIYIWFTTSGTISEKFRKL 618


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 310 SDCRSNIILLLSFF*DKYYPNNLSKTS 390
           S C SN++ L     D   P NLSK S
Sbjct: 855 SGCPSNMMELQVDIADSQQPLNLSKKS 881


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,501
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)