Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1531
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...   250   6e-67
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    43   2e-04
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    38   0.005
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    38   0.005
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    38   0.005
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    36   0.016
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    28   5.7  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    28   5.7  
Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    27   10.0 
AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein ...    27   10.0 

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score =  250 bits (612), Expect = 6e-67
 Identities = 116/160 (72%), Positives = 139/160 (86%), Gaps = 1/160 (0%)
 Frame = +2

Query: 110 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVT 289
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSGVT
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGVT 63

Query: 290 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 469
           +GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKG++  +L+RE  W+
Sbjct: 64  IGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREARWD 123

Query: 470 F-NPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKG 586
           F    +++VG H+TGGD+ G V EN L+KH++L+PP A G
Sbjct: 124 FVVSKDLRVGGHVTGGDIIGTVDENLLIKHKILLPPSACG 163


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
 Frame = +2

Query: 92  IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMAT 256
           I N     R  Y  V  V+GP+V    +      E+V++     ++  G+++ +  + A 
Sbjct: 18  IRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAV 77

Query: 257 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 385
           +QV+E TSG+   + +   TG  L   +   +LG IF+G  +P+
Sbjct: 78  VQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPI 121


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +2

Query: 107 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 286
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 25  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 83

Query: 287 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 385
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 84  REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +2

Query: 107 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 286
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 52  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 110

Query: 287 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 385
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 111 REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
 Frame = +2

Query: 92  IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMAT 256
           I N   + +  Y  VF V+GP+V    +      E+V++        +G+++    + A 
Sbjct: 30  IQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAV 89

Query: 257 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 385
           +QV+E T+GV         TG      +   +LG IF+G  +P+
Sbjct: 90  VQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
 Frame = +2

Query: 122 GYVFAVSGPVVTAE--KMSGSAMYELVRVGYN-ELVGEIIRLEGD-MATIQVYEETSGVT 289
           G + AV G VV  +  +     +  L  VG +  L+ E+ +  GD +      + T G+ 
Sbjct: 70  GRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129

Query: 290 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR-EVDW 466
            G PV  TG P+ + +GP  LG I + I  P+ +   +    +       P      V+ 
Sbjct: 130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQ 189

Query: 467 EFNPLNVKV 493
           E     +KV
Sbjct: 190 EILVTGIKV 198


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 366 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 253
           + +E  IP PS  D      S GS   TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 268 VYLD----GGHVTFKTDNLTDEFIVTDTDQLVHSRSGHF 164
           VY+D     G + +  DN T EF+  DTD  V     H+
Sbjct: 283 VYMDRVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNHY 321


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 366 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 253
           + +E  IP PS  D      S GS   TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344


>Z81492-5|CAB04024.1|  368|Caenorhabditis elegans Hypothetical
           protein E03H4.8 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 259 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRY 137
           DG  +T    NL    I   T  L HS +GHFF +    +Y
Sbjct: 46  DGERLTLSVKNLGSSEISPQT--LAHSSNGHFFMACGDGKY 84


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/91 (21%), Positives = 39/91 (42%)
 Frame = +2

Query: 20  SFPSFSSRIKNN*FKMASKGGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVR 199
           ++P   S +  N  K   KGGL  +    N+E F  ++      +  E++  + +++ + 
Sbjct: 363 NYPQIVSNVSTN-NKNRFKGGLEKLHVYANDELFSKMYPELVVNIECERIGETKIHKYIL 421

Query: 200 VGYNELVGEIIRLEGDMATIQVYEETSGVTV 292
             YN  + + I +      I  +E T   TV
Sbjct: 422 SKYNIDINKYIDINKYNDIIITHENTVNPTV 452


>AF490975-1|AAQ06433.1|  703|Caenorhabditis elegans ABC7 protein
           protein.
          Length = 703

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/69 (20%), Positives = 36/69 (52%)
 Frame = +2

Query: 284 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVD 463
           +T+GD +L       + +    LGS++  +++ L D+N++   + +   I   + A+ ++
Sbjct: 367 LTIGDLILANTLLFQLSIPLNFLGSVYREVRQGLVDMNQMFSLLTLKPKIVEAADAKRLE 426

Query: 464 WEFNPLNVK 490
              N +++K
Sbjct: 427 IVDNDISLK 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,337
Number of Sequences: 27780
Number of extensions: 299298
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)