Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1530
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 341  LRVAPEEHPVLLTEAPLNPKANREKM 418
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -1

Query: 202  HTDHHALMAGPSDDRGEYGARSIISCETG 116
            H   H      +DD+  +  R ++SC +G
Sbjct: 1686 HCTIHRTQVKETDDKICFTMRPVVSCASG 1714


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 104 GMCKAGFAGD 133
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 122 NRPCTYRSHCLLPTRQLPR 66
           N   TY + CLL  ++ PR
Sbjct: 478 NMAATYMNECLLNIQKSPR 496


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 330 STMSCVSPPRNTP 368
           S ++C  PPR TP
Sbjct: 388 SCVACSPPPRQTP 400


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 217 RVLLSHTDHHALMAGPSDDRGEYGARSIISC 125
           RVLL+ TD   +    S D  EYG     +C
Sbjct: 343 RVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,708
Number of Sequences: 438
Number of extensions: 4073
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)