Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1529
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    29   0.72 
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   5.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.1  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.9  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 466 SYTSIHARP*HSFELIKNKKTRLPP 540
           +YT  HAR  +  E+I+N KTRLPP
Sbjct: 482 NYTEHHARVSNVMEMIRN-KTRLPP 505


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 89  NKSVLALRTHKTLHKHIKILNSFL 18
           NK  L  R+H++L +HI++L S L
Sbjct: 260 NKDALTHRSHESLQQHIELLESTL 283


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 384  KDCLKSPITNDRKRIVKKNHSSYN 455
            KDC +   TN+ K I++KN   +N
Sbjct: 1360 KDCSQVATTNNAKVIIRKNQRFFN 1383


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 499 YVMVLREYLCSSIIGL*LE*FFLTIRFRSLVIGLLRQSFFFIAH 368
           Y ++  EY  S ++ + +  +FLT+   SLVI ++  SF  + H
Sbjct: 448 YDIMDAEYFVSCLLFI-ISAYFLTLWLMSLVIAVVTSSFIDLQH 490


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 178 LLIVARIQRLLRVDSIVMLTFAVKHSAFHFNEWASQQTLQLGFISCL 318
           L +  R+QR + +     L  A+  +  HF  WA++   +L   + L
Sbjct: 191 LELEVRLQRFIELIKSKKLCQAIAFAKAHFGTWANEHPARLQLAAAL 237


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -2

Query: 437 FFDNSFPVIGNRTFKAIFFFYC--TC----SYFTMTIAIWRPPLTLRHEMKPN-CNVCWL 279
           F  N  P+  +    ++  + C  TC    SYF +T++I R P+ +   M+P  C++ W 
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAESYFFLTLSI-RDPIIVLSTMRPYLCSIYWA 729

Query: 278 AHSL 267
              L
Sbjct: 730 GSRL 733


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 282 ASPLIKMERTMLHSKSKHDDAIYSQEP 202
           +SP I  ER+     SK  +AIY++EP
Sbjct: 554 SSPTITNERSSNVESSKKVEAIYTKEP 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,577
Number of Sequences: 5004
Number of extensions: 46901
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)