Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1529
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223...    32   0.43 
06_03_0002 - 15280292-15281550,15282714-15282840                       28   6.9  
02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891           27   9.2  

>04_04_0425 -
           25121344-25121603,25121696-25121838,25122144-25122348,
           25122453-25122590,25122999-25123185,25123519-25123852,
           25123930-25124018,25124088-25124231,25124514-25124603
          Length = 529

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -2

Query: 539 GGSRVFLFFISSKLCYGLA*I---LV*LYYWIVT*MIFFDNSFPVIGNRTFKAIFFFYCT 369
           G S+  L+ +S  L   LA I   LV   Y+ +  +I   +S PVI N    A+ F Y  
Sbjct: 444 GKSQTRLWVLSFVLSVALALIPAPLVEFRYYTIPLVILVLHS-PVISNVKLLALGFLYAA 502

Query: 368 CSYFTMTIAIWRP 330
             +FT+ + ++RP
Sbjct: 503 VDFFTLAMFLFRP 515


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 529 RLPPEPRGGARYPIRPIVSRITIHWAVVL 615
           R PP P G  R P+RP+ S     W VVL
Sbjct: 138 RFPPAPPGAKRRPVRPLRSL----WRVVL 162


>02_02_0297 - 8693118-8693274,8695109-8695674,8696370-8696891
          Length = 414

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 324 KWWSPNCDSHSEVRTCAIK--KKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
           KWW  NC S S + T  ++   +    +P+  + + I+ +  +  + II+ +K+
Sbjct: 355 KWWKENCHSPSSITTKKLRTIMQTLGLNPMKAELQDIISEVDADGSGIIDFYKF 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,018
Number of Sequences: 37544
Number of extensions: 282011
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)