Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1529
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 28 4.7
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 28 4.7
AC024798-9|AAK29918.2| 640|Caenorhabditis elegans Hypothetical ... 28 4.7
Z66500-11|CAC42334.1| 625|Caenorhabditis elegans Hypothetical p... 27 8.2
Z66500-10|CAB61022.1| 666|Caenorhabditis elegans Hypothetical p... 27 8.2
Z66500-9|CAA91307.1| 672|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 27 8.2
AF070920-1|AAC24231.1| 554|Caenorhabditis elegans cytoplasmic s... 27 8.2
AF063244-1|AAC16434.1| 666|Caenorhabditis elegans cytoplasmic s... 27 8.2
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 27 8.2
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 306 HFMSQGKWWSPNCDSHSEVRTCAIKKKDCLKSPITNDRKRIVKKNHSS 449
HF G+ W+ +S+S ++ IKK D L+ + + IV +N +S
Sbjct: 698 HFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDEL---GRPIVPQNQTS 742
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 306 HFMSQGKWWSPNCDSHSEVRTCAIKKKDCLKSPITNDRKRIVKKNHSS 449
HF G+ W+ +S+S ++ IKK D L+ + + IV +N +S
Sbjct: 698 HFQEFGEDWADKLNSYSPIKFTPIKKPDDLRDEL---GRPIVPQNQTS 742
>AC024798-9|AAK29918.2| 640|Caenorhabditis elegans Hypothetical
protein Y48G9A.3 protein.
Length = 640
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -1
Query: 264 MERTMLHSKSKHDDAIYSQEPLNACYYQELGKFINLLSIILL 139
+E T S++ H +A+ ++PL+ +QE + L+ +++L
Sbjct: 498 IEHTKAWSRASHAEALLKEKPLSQTKWQEAIAWAKLVELVIL 539
>Z66500-11|CAC42334.1| 625|Caenorhabditis elegans Hypothetical
protein T05C12.6c protein.
Length = 625
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KKKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
+++DC +SP+TND +V ++ NP+ H +
Sbjct: 528 RRRDC-ESPMTNDYASMVGESQIGMNPVGNYHVF 560
>Z66500-10|CAB61022.1| 666|Caenorhabditis elegans Hypothetical
protein T05C12.6b protein.
Length = 666
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KKKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
+++DC +SP+TND +V ++ NP+ H +
Sbjct: 569 RRRDC-ESPMTNDYASMVGESQIGMNPVGNYHVF 601
>Z66500-9|CAA91307.1| 672|Caenorhabditis elegans Hypothetical
protein T05C12.6a protein.
Length = 672
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KKKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
+++DC +SP+TND +V ++ NP+ H +
Sbjct: 569 RRRDC-ESPMTNDYASMVGESQIGMNPVGNYHVF 601
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 282 PTNIAIRFHFMSQGKWWSPNCDSHSEVRTCAIKKKDCLKSPITNDRKRIVKKNHSSYNPI 461
P N+ I + F KW D+ E+ T + + D K+ DR+R +K HSS P
Sbjct: 531 PKNVIINW-FKEFQKWL---VDNDEELDTIDVNELDSYKT--IEDRRRALKAWHSSKTPS 584
Query: 462 IELHKY 479
+ + Y
Sbjct: 585 VMIIGY 590
>AF070920-1|AAC24231.1| 554|Caenorhabditis elegans cytoplasmic
signalling transducer protein.
Length = 554
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KKKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
+++DC +SP+TND +V ++ NP+ H +
Sbjct: 457 RRRDC-ESPMTNDYASMVGESQIGMNPVGNYHVF 489
>AF063244-1|AAC16434.1| 666|Caenorhabditis elegans cytoplasmic
signalling transducer protein.
Length = 666
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KKKDCLKSPITNDRKRIVKKNHSSYNPIIELHKY 479
+++DC +SP+TND +V ++ NP+ H +
Sbjct: 569 RRRDC-ESPMTNDYASMVGESQIGMNPVGNYHVF 601
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 282 PTNIAIRFHFMSQGKWWSPNCDSHSEVRTCAIKKKDCLKSPITNDRKRIVKKNHSSYNPI 461
P N+ I + F KW D+ E+ T + + D K+ DR+R +K HSS P
Sbjct: 531 PKNVIINW-FKEFQKWL---VDNDEELDTIDVNELDSYKT--IEDRRRALKAWHSSKTPS 584
Query: 462 IELHKY 479
+ + Y
Sbjct: 585 VMIIGY 590
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,290
Number of Sequences: 27780
Number of extensions: 264223
Number of successful extensions: 767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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