Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1527
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    25   0.62 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   0.82 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   5.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   5.8  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 FFNTLLNIVFLGVSNSNIYFISSTQITE 379
           FF+   N++F  ++N  +YF+ S Q  +
Sbjct: 740 FFDIRKNLIFSLIANVAMYFVISVQFNQ 767


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 109 ITGDYFYNINNNKWLHYFDYNNIFFVLVMSHA-ICNSPILFD 231
           +TGD FYN  N+ +  +++ N     L    A + N+P   D
Sbjct: 396 LTGDQFYNFLNHNFDRHYEENRAPLGLYFHAAWLKNNPEFLD 437


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 452 HVGPVGDHVPEVSLVVAKRAFV 517
           H+GP   H    S  V+K AF+
Sbjct: 6   HIGPPTPHESNTSTPVSKSAFI 27


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 540 GRRGPNSPTNARFATTRLTSGT 475
           GRRGP    + R     L +GT
Sbjct: 328 GRRGPGPARSRRHLPAHLVAGT 349


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 184 QRRYYYNRNN 155
           Q++YYYN+N+
Sbjct: 356 QQQYYYNKNH 365


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 184 QRRYYYNRNN 155
           Q++YYYN+N+
Sbjct: 304 QQQYYYNKNH 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,154
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)