Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1527
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    30   1.5  
07_01_0016 - 112407-112660,113182-113323                               30   1.5  
04_04_1097 - 30859963-30860302,30862130-30863058                       29   2.0  
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150...    29   3.6  
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364...    28   4.7  
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    27   8.2  

>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -1

Query: 561 CCFRDPTGRRGPNSPTNARFATTR--LTSGTWSPTGPTWRTTCSADIKQREPRLPYRR 394
           CC    +  R    P  A  ++ R    S TW+P    +  T S    + +PR P RR
Sbjct: 41  CCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFPRRR 98


>07_01_0016 - 112407-112660,113182-113323
          Length = 131

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -1

Query: 540 GRRGPNSPTNARFA--TTRLTSGTWSPTGPTWRTTCSADI 427
           GRRG      +      T L +G W   G  WR  C+AD+
Sbjct: 30  GRRGGGGAEASALTLVVTGLEAGQWRGVGRVWRRPCAADV 69


>04_04_1097 - 30859963-30860302,30862130-30863058
          Length = 422

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 575 HGGFSAAFGTQRGGVARTRLQTRALQRPGLPPGHGHLQARRGARHA 438
           HGG S A       V  +   TR L  PGL    GH+ A     H+
Sbjct: 56  HGGGSVAMSVDNSSVGSSDSHTRMLNHPGL---RGHVAANYSVGHS 98


>04_03_0818 +
           20014685-20014687,20014792-20014831,20014988-20015025,
           20015359-20015485,20015571-20015797,20015919-20016064,
           20016166-20016284,20016711-20016799,20016881-20017003,
           20017123-20017158,20017464-20017562,20017642-20017833
          Length = 412

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 492 RLTSGTWSPTGPTWRTTCSAD 430
           ++  G+W P+GP W+   S D
Sbjct: 385 KIGDGSWCPSGPEWKLAASGD 405


>04_03_0548 -
           17035394-17035749,17035761-17036295,17036325-17036458,
           17037053-17037134
          Length = 368

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 183 CPCHVPRHLQQSH 221
           C CH  RHLQQ+H
Sbjct: 311 CKCHAQRHLQQAH 323


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 299 FNTLLNIVFLGVSNSNIYFISSTQITEFSHSCLRYGSLGSLC 424
           F  L+N++  GV+   +Y I  T IT+ S   LR+ +   +C
Sbjct: 335 FEQLINLIEKGVAVEQLYQIDETDITKNSLRFLRFLTEIEIC 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,635,998
Number of Sequences: 37544
Number of extensions: 258377
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)