Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1526
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 395 VLLTEAPLNPKANREKMTQDHVRNIQHARHVRGHPSRALA 514
           VL   APL  +      T D  R      +VRG+P + ++
Sbjct: 301 VLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVS 340


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/37 (24%), Positives = 13/37 (35%)
 Frame = +1

Query: 490 WPSKPCSRCTRPVVPPVSCWTPATVSSHTVPIYQGYR 600
           W S    +     +P  S W       H  P +Q Y+
Sbjct: 200 WDSDYTDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYK 236


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 130 GMCKAGFAGD 159
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,755
Number of Sequences: 438
Number of extensions: 4930
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)