Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1523
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    26   0.22 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          26   0.22 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.1  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 YITDNPQFNADLHVNQRYCNHN 595
           Y  ++PQFN +   NQ Y N+N
Sbjct: 204 YQFNDPQFNFNYQYNQAYSNYN 225


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 530 YITDNPQFNADLHVNQRYCNHN 595
           Y  ++PQFN +   NQ Y N+N
Sbjct: 224 YQFNDPQFNFNYQYNQAYSNYN 245


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 213 KLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRASKTHR 347
           K+ ++L E    +  +R + +N+FH  RS  K  L        HR
Sbjct: 39  KILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHR 83


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 289 PDVLNLKRFYLSYGRRKH 342
           PD  + + +Y+  G RKH
Sbjct: 926 PDKADCRMYYMCEGERKH 943


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 545 PQFNADLHVNQRYCNHN*ILC 607
           P+F+A  HV + + N + ++C
Sbjct: 295 PEFDAPAHVGEGWQNTDFVVC 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,196
Number of Sequences: 336
Number of extensions: 2616
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)