Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1523
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    31   0.17 
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    30   0.30 
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.1  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   5.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   6.5  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.5  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   6.5  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 168 GESLHLNIRIYGLLPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRASKTHR 347
           G+ +   ++  GL P+LP  L   +  ++++RK L      + S+F+  L++ R  +  R
Sbjct: 68  GQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLAR 127


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 301 NLKRFYLSYGRRKHTGRKYTQASKILSDDNVLNAL 405
           N  +F++ YG  KH   K+T   +++   NVL+AL
Sbjct: 372 NGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDAL 406


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 6   SSGS--RSMSPAVGKSYVSKPSYTR 74
           S+GS  R+ SPAVG    SKPSY++
Sbjct: 75  STGSTPRTASPAVGNQDYSKPSYSQ 99


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 88  HTLLTRVYEGLETYDLPTAGDIDR--EPLEP 2
           HT+  R Y GL+       G+ D+   PLEP
Sbjct: 569 HTIFARAYAGLDVVHRIEQGETDKYDRPLEP 599


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 19  DRCHPLLVSHTFLNLHIRELIMCVLPSGNLIGAVNITLSIITCLFASTTAV 171
           D C  L    TFLNL+     M  L   NL    +  + +ITC F+   ++
Sbjct: 232 DGCTELSHFITFLNLNCELDAMRALSLNNLPDLKDSDIELITCKFSKLNSL 282


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 443 IADLSEVSNNIIDYFNSSHVSHICNCNHRYITDNPQFN 556
           + ++ E  N   D  + S V +  N  H Y  DN  FN
Sbjct: 47  VEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFN 84


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 153 RVNDRGESLHLNIRIYGLLPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKL 326
           +VN R      +  I  + P   S   ++  HSL++ + L  T    R  + T LL L
Sbjct: 3   KVNMRALLESFSTVILSIYPLAKSTNQQSHSHSLSLTQFLYETIRRSRVDYTTLLLAL 60


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 39  GKSYVSKPSYTRVNNVCIALGKSHRSGQYNTKY 137
           G+ Y+S+ + ++  N C   G+  + GQ ++ Y
Sbjct: 287 GRCYISEEACSKATNDCSGHGRCSKYGQLDSCY 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,154
Number of Sequences: 5004
Number of extensions: 42968
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)