Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1523
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1278 + 28925766-28927196                                         31   0.71 
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...    29   3.8  
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...    29   3.8  
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    29   3.8  
02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021...    28   6.7  
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416     28   6.7  
08_02_0287 + 15347145-15349604                                         27   8.8  

>06_03_1278 + 28925766-28927196
          Length = 476

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 48  YVSKPSYTRVNNVCIALGKSHRSGQYNTKYNYMLIRVNDRGESLH 182
           Y +   + RV +V + +G    + +Y+T  +Y+ + V +  ESLH
Sbjct: 424 YAANEDWRRVVDVRMEMGVWKETSRYSTALSYVEVNVEENAESLH 468


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 189 IRIYGLLPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRASKTHR 347
           ++ +GL P++P  L   +  ++ IRK L      + S+F+  L++ R  +  R
Sbjct: 114 LKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 166


>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 189 IRIYGLLPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRASKTHR 347
           ++ +GL P++P  L   +  ++ IRK L      + S+F+  L++ R  +  R
Sbjct: 75  LKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLAR 127


>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
            77916-78116,78463-78541,78637-78678,78788-78847,
            79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 488  NSSHVSHICNCNHRYITDNPQFNADLH 568
            N  H+++  + N   +T NP F+++LH
Sbjct: 1086 NQEHINNYTSVNDYAVTSNPSFHSELH 1112


>02_05_0396 -
           28600855-28601475,28601579-28601761,28601970-28602129,
           28602217-28602795,28603044-28603618,28604161-28604176,
           28605566-28605663,28605774-28606286
          Length = 914

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = +3

Query: 105 SHRSGQYNTKYNYMLIRVNDRGESLHLNIRIYGLLPKLPSKLSEAMYHSLTIRKILNNTF 284
           SH      T Y+   I VND+ E   L+I  Y  L ++   +  A+ + L+   I +   
Sbjct: 531 SHLFMSNGTSYDITAI-VNDKFE---LDIDAYNKLGRINLSVFFALAYGLSFATIASTVT 586

Query: 285 HTRRSQFKTFLLKLRASKTHRT*VHTGL 368
           H      K    + RAS+  +  +HT L
Sbjct: 587 HVGLFYGKEIYHRFRASQKEKPDIHTRL 614


>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
          Length = 218

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
 Frame = +3

Query: 9   SGSR-SMSPAVGKSYVS-----KPSYTRVNNVCIALGK-SHRSGQYNT----KYNYMLIR 155
           SGSR    P V   +++     +P+Y  V  + +   K    S Q       ++   L++
Sbjct: 62  SGSRYCQEPVVTHDFLNTRCRRRPNYGEVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVK 121

Query: 156 VNDRGESLHLNIRIYGLLPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRAS 335
                + LH+ ++ +GL PK+   L   +  ++ IRK L      + S F+  L++ R  
Sbjct: 122 SIASSKILHI-LKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIH 180

Query: 336 KTHR 347
           +  R
Sbjct: 181 RLVR 184


>08_02_0287 + 15347145-15349604
          Length = 819

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 316 YLSYGRRKHTGRKYTQASKILSDDNVLNAL*DLYCNTCYLT 438
           +L  GR+ H G  Y  A++  +D +V+N L DLYC    L+
Sbjct: 236 FLEGGRQIH-GYAYRSATE--TDTSVINVLIDLYCKCSRLS 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,310
Number of Sequences: 37544
Number of extensions: 243031
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)