Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1523
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF038611-3|AAB92036.2|  333|Caenorhabditis elegans Hypothetical
           protein E04A4.1 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 207 LPKLPSKLSEAMYHSLTIRKILNNTFHTRRSQFKTFLLKLRASKTH 344
           L KLP K S  ++H + +  ++  +  ++ ++ +T  L L+A   H
Sbjct: 11  LLKLPQKSSNYVFHRMLVADLIGFSLTSKNAKLQTKRLGLKAEDVH 56


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 379 IKFSRPVCTYVLCVFDARNLSKNVLN*ERRVWNVLFRIFLIVR 251
           IK +  +CT +  V D    S N  N  R VWN+ +++F  +R
Sbjct: 483 IKSNEQMCTEMEKVHDVCVGSLNHANRHRFVWNITYKLFNYLR 525


>Z83217-6|CAD59136.1|  128|Caenorhabditis elegans Hypothetical
           protein C10C6.7a protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 452 LSEVSNNIIDYFNSSHVSHICNCNH 526
           +S  S+N  +YFN +  S +C C+H
Sbjct: 100 ISSTSDNFSNYFNCNSNSSLCWCSH 124


>U00048-6|AAB53828.1|  873|Caenorhabditis elegans Hypothetical
           protein C05D11.8 protein.
          Length = 873

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 482 YFNSSHVSHICNCNHRYITDNPQ-FNADLHVNQ 577
           Y N SH+SH+ N N       PQ  NADL +++
Sbjct: 533 YSNGSHLSHVFNINKVCPLGQPQEQNADLSLSE 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,794
Number of Sequences: 27780
Number of extensions: 232572
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)