Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1522
         (611 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    37   0.33 
UniRef50_A6AL15 Cluster: Response regulator receiver domain prot...    36   1.0  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    33   5.3  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 37.1 bits (82), Expect = 0.33
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +1

Query: 520 RGGARYPIRPIVSRIT 567
           RGGARYPIRPIVSRIT
Sbjct: 260 RGGARYPIRPIVSRIT 275


>UniRef50_A6AL15 Cluster: Response regulator receiver domain
           protein; n=4; Vibrio|Rep: Response regulator receiver
           domain protein - Vibrio harveyi HY01
          Length = 514

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 254 VLKHYLPVFNDKKHGSRLC-EKFLYVVRYLFRKYVFLVVKF 373
           VL+H+LP  NDK+H SR+C E FL   +   R+ V ++  +
Sbjct: 186 VLEHFLPFCNDKEHASRICAEAFLLHQKGKIREAVEVLANY 226


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 562 YDSL*GELGTGPPLE 518
           YDSL GELGTGPPLE
Sbjct: 278 YDSLYGELGTGPPLE 292


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,392,021
Number of Sequences: 1657284
Number of extensions: 10018498
Number of successful extensions: 17440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17439
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)