Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1522
(611 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 25 0.50
EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxyla... 24 0.88
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 22 3.5
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 22 3.5
EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine vasopre... 21 6.2
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.2
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.2
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.2
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.2
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.2
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 6.2
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 6.2
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 6.2
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 6.2
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 25.0 bits (52), Expect = 0.50
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 315 FSHKREPCFLSLNTGR*CFK 256
FSH+ +P + LN R CF+
Sbjct: 190 FSHRNQPTSIDLNAVRLCFQ 209
>EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxylase
protein.
Length = 475
Score = 24.2 bits (50), Expect = 0.88
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 356 IRTYGINNERRIKTFHINESHAFYH*TRGD 267
+R YGI N + H+ +H F RGD
Sbjct: 364 LRLYGIENLQAFIRKHVELAHYFESLVRGD 393
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 22.2 bits (45), Expect = 3.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 516 IFFFQNVNSDDNAKFVVIMFAFALSHTTHTSLQIMNHF 403
I+F Q++N D ++F F + T ++N F
Sbjct: 432 IYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVF 469
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 22.2 bits (45), Expect = 3.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 516 IFFFQNVNSDDNAKFVVIMFAFALSHTTHTSLQIMNHF 403
I+F Q++N D ++F F + T ++N F
Sbjct: 432 IYFGQDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVF 469
>EF222295-1|ABN79655.1| 146|Tribolium castaneum arginine
vasopressin-like peptide protein.
Length = 146
Score = 21.4 bits (43), Expect = 6.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = -3
Query: 333 RTTYKNFSHKREPCFLS-----LNTGR*CF 259
R + F H+REPC NTGR F
Sbjct: 77 RCQREGFFHEREPCIAGSAPCRKNTGRCAF 106
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 267 ISPCLMIKSMALV 305
I PC++I SMAL+
Sbjct: 219 IVPCVLISSMALL 231
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 267 ISPCLMIKSMALV 305
I PC++I SMAL+
Sbjct: 219 IVPCVLISSMALL 231
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 267 ISPCLMIKSMALV 305
I PC++I SMAL+
Sbjct: 219 IVPCVLISSMALL 231
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 267 ISPCLMIKSMALV 305
I PC++I SMAL+
Sbjct: 219 IVPCVLISSMALL 231
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 267 ISPCLMIKSMALV 305
I PC++I SMAL+
Sbjct: 219 IVPCVLISSMALL 231
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 481 IVIAIDILKKEDSRGGARYPIRPIVS 558
+++ ID++KK + G A I P+ S
Sbjct: 745 VLLLIDLMKKNRNLGAACGRIHPVGS 770
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 481 IVIAIDILKKEDSRGGARYPIRPIVS 558
+++ ID++KK + G A I P+ S
Sbjct: 745 VLLLIDLMKKNRNLGAACGRIHPVGS 770
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 481 IVIAIDILKKEDSRGGARYPIRPIVS 558
+++ ID++KK + G A I P+ S
Sbjct: 745 VLLLIDLMKKNRNLGAACGRIHPVGS 770
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 481 IVIAIDILKKEDSRGGARYPIRPIVS 558
+++ ID++KK + G A I P+ S
Sbjct: 745 VLLLIDLMKKNRNLGAACGRIHPVGS 770
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,753
Number of Sequences: 336
Number of extensions: 2916
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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