Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1522
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   3.7  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.9  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   8.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 81  CAFALSP-F*VNELRNAVRYLCIFS 152
           CAF   P F +N+ RN++ Y C FS
Sbjct: 250 CAFTDHPHFYLNDSRNSLNYFCPFS 274


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 466 YYVRFRIKSYHTHELA 419
           +Y+RF +K+YH +E+A
Sbjct: 75  FYLRFSLKNYHYYEVA 90


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 471 VVIMFAFALSHTTHTSLQIMNHFVLRRIIQFNGNLT 364
           ++    FA+ H   T+   + HF LR+I   +  L+
Sbjct: 440 IIACLIFAIFHVQQTTANAVEHFKLRKITALSAALS 475


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +2

Query: 17  LSNSASHRLLTLATIGFNFPLVRL---CFITILSQ*VTKCCPIFMYFQLKGIQSNAIS 181
           L  S   ++    TIG   P+V +   CF    +Q V +C  + + F  + ++  AIS
Sbjct: 110 LEKSIFGKVAFSVTIGITCPIVFIAIFCFFETWTQAVAQCIKVTVIFLAQCVKVTAIS 167


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = -3

Query: 573 VNCNTTHYRANWVPGPPSRIFFFQNVNSDDNAKFVVIMFAFALSHTTHTSLQIMNHF--V 400
           +     H   +W+PG    ++F  + N   +    VI   FA S +     Q+  +   +
Sbjct: 707 IQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMFIAVIQVNFAPSESDLKMEQLKMYLARL 766

Query: 399 LRRIIQFNGNLTTRNTYLRN 340
           LR    F  +LT      RN
Sbjct: 767 LRNYNPFQASLTLNALIKRN 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,567
Number of Sequences: 5004
Number of extensions: 45897
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)