Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1522
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0241 - 16778301-16779767                                         31   0.95 
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448     29   2.2  
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156...    28   5.1  
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109...    28   6.7  
04_04_0336 + 24500665-24502647                                         27   8.9  

>02_03_0241 - 16778301-16779767
          Length = 488

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 558 THYRANWVPGPP-SRIFFFQNVNSDDNAKFVVIMFAFALSHTTH 430
           T   A W+P PP  R+FF++    DD    V+   A +LS   H
Sbjct: 46  TFLDAIWLPTPPVDRVFFYRLGADDDGVDAVLSRLADSLSRALH 89


>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
          Length = 495

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 558 THYRANWVPGPP-SRIFFFQNVNSDDNAKFVVIMFAFALSHTTH 430
           T   A W+P PP  R+F ++   +DD+   V+   A +LS   H
Sbjct: 44  TFLDAMWLPTPPVDRVFLYRLGAADDDVDAVLSRLADSLSRVLH 87


>11_01_0199 +
           1563483-1563572,1563673-1563852,1564091-1564402,
           1564753-1564800,1565205-1565438,1565632-1566219
          Length = 483

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 450 ALSHTTHTSLQIMNHFVLRRIIQFNGNLTTRNTYLRNK*RTTYKNFSH 307
           AL   T++ + I+  F+   ++ F G LT  + YL +  +TTY+NF +
Sbjct: 252 ALRKETYSFVLIIYTFI---VVWFVGGLTVFHLYLISTNQTTYENFRY 296


>01_06_1472 -
           37609732-37609851,37609883-37610104,37610542-37610922,
           37612583-37612816,37613589-37613738,37613831-37614016,
           37615058-37615120
          Length = 451

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 450 ALSHTTHTSLQIMNHFVLRRIIQFNGNLTTRNTYLRNK*RTTYKNFSHKRE 298
           AL H+  +   ++  F+    + F G LT  +TYL +  +TTY+NF ++ +
Sbjct: 175 ALKHSPASLALLIYCFIC---LWFVGGLTGFHTYLISTNQTTYENFRYRAD 222


>04_04_0336 + 24500665-24502647
          Length = 660

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 97  HHSKSMSYEMLSDIYVF 147
           H  K +S EMLSD+YVF
Sbjct: 328 HDGKPISTEMLSDVYVF 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,293,399
Number of Sequences: 37544
Number of extensions: 249966
Number of successful extensions: 419
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)