Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1520
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 171 7e-44
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 30 0.30
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.53
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 28 0.92
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.7
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 25 6.5
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 6.5
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 25 8.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 8.6
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 171 bits (416), Expect = 7e-44
Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 4/193 (2%)
Frame = -2
Query: 604 PQWGTHQQVHLPKHLPK--HPA-LAHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSS 434
PQ G+ + V LP LP P+ L L+PLGW+HTQ +ELP LS D+TTHAKI+S +
Sbjct: 2174 PQLGSIRNVQLPSKLPHDLQPSILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPE 2233
Query: 433 WDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPK-GYLPSHYERVQMLLS 257
WD K + +T S+ PGS SL AY ++ G EWG +N D ++ GY PS E+ Q+LLS
Sbjct: 2234 WD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLS 2292
Query: 256 DRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAA 77
DR G+F+VP +G WNYNF G P M Y ++L P F+ HRP H +++ +E
Sbjct: 2293 DRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELE--T 2350
Query: 76 APTIAADREDLFA 38
+ D D FA
Sbjct: 2351 NDRLEEDMPDAFA 2363
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.9 bits (64), Expect = 0.30
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 595 GTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQDITTH 461
GT + L + KH +L LGW+HT P + +S D+ TH
Sbjct: 318 GTTDEASLFEFQDKH----NLLTLGWIHTHPTQTCFMSSVDLHTH 358
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2
Query: 496 LPQLSPQDITTHAKIMSDNSSWDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGV 332
LP + T + +MS S+D + +I ++ +F+P C + + P + WGV
Sbjct: 464 LPYPTSSRKRTRSPLMSKGKSYDRKGSISMSKNFSP-DCEILVTEDCPKEFVWGV 517
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 0.92
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 505 PNELPQLSPQDITTHAKIMSDNSSWDGE 422
P+ L SP D++ K++ SWDGE
Sbjct: 112 PSYLTDSSPSDLSVENKVLLTCPSWDGE 139
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 322 DRGNNPKGYLPSHYERVQMLLSDRFL 245
D GN + Y+P YER+ + ++ +
Sbjct: 191 DNGNGEQNYIPEQYERLDSPVKEKII 216
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 511 TQPNELPQLSPQDITTHAKIMSDNSSWDGEKT 416
T+ + PQ +PQ+ T+ K+ +DN D T
Sbjct: 141 TKIEKFPQYNPQEGYTYPKLSNDNLEVDHSNT 172
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 246 WAISWCRPRAVGI 208
WA+SW PR VG+
Sbjct: 399 WALSWNTPRVVGV 411
>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 483 DSWGNSLGCVCIHP 524
D G +LGCV +HP
Sbjct: 64 DEHGTALGCVAVHP 77
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 136 YHEVHRPAHFMNFAAMEDAAAPTIAADREDL 44
+HE H +HF N A +A++ A + L
Sbjct: 7 FHEHHAKSHFHNNACQSNASSSACRASEDHL 37
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -2
Query: 442 NSSWDGEKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPKGYLPSHYER 275
N S + + + I G +LT L G+ N D G+ YLP+ +R
Sbjct: 22 NISINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQR 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,572
Number of Sequences: 5004
Number of extensions: 54455
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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