Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1520
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 297 3e-81
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 297 3e-81
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 30 1.6
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 30 1.6
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 30 1.6
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 30 1.6
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 30 1.6
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 29 2.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 2.2
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 29 3.8
10_08_0261 + 16305388-16306104 28 5.0
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 5.0
05_06_0231 - 26587900-26587980,26588291-26588356,26588452-265885... 28 5.0
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 6.6
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 28 6.6
05_03_0302 + 11984534-11984548,11985365-11985506,11985725-119858... 27 8.7
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 27 8.7
04_03_0313 + 14233049-14234362,14234558-14235523 27 8.7
04_03_0241 - 13243938-13244453,13244538-13246334 27 8.7
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 27 8.7
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 27 8.7
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 297 bits (730), Expect = 3e-81
Identities = 127/188 (67%), Positives = 150/188 (79%)
Frame = -2
Query: 604 PQWGTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDG 425
PQ GTHQ V LP +LP+H L L+PLGWMHTQPNE PQLSPQD+T+HAKI+ +N WDG
Sbjct: 2164 PQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDG 2223
Query: 424 EKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFL 245
EK II+TCSFTPGSCSLTAYKLTPSGYEWG N D G+NP GYLP+HYE+VQMLLSDRFL
Sbjct: 2224 EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDTGSNPHGYLPTHYEKVQMLLSDRFL 2283
Query: 244 GYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTI 65
G++MVP WN+NFMGV+HDP MKY ++LG PR+FYHE HRP HF+ F+ +++
Sbjct: 2284 GFYMVPDNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPTHFLEFSNIDE--GEVA 2341
Query: 64 AADREDLF 41
DRED F
Sbjct: 2342 EGDREDTF 2349
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 297 bits (730), Expect = 3e-81
Identities = 127/188 (67%), Positives = 150/188 (79%)
Frame = -2
Query: 604 PQWGTHQQVHLPKHLPKHPALAHLQPLGWMHTQPNELPQLSPQDITTHAKIMSDNSSWDG 425
PQ GTHQ V LP +LP+H L L+PLGWMHTQPNE PQLSPQD+T+HAKI+ +N WDG
Sbjct: 2164 PQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQWDG 2223
Query: 424 EKTIIITCSFTPGSCSLTAYKLTPSGYEWGVRNTDRGNNPKGYLPSHYERVQMLLSDRFL 245
EK II+TCSFTPGSCSLTAYKLTPSGYEWG N D G+NP GYLP+HYE+VQMLLSDRFL
Sbjct: 2224 EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDSGSNPHGYLPTHYEKVQMLLSDRFL 2283
Query: 244 GYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTI 65
G++MVP WN+NFMGV+HDP MKY ++LG PR+FYHE HRP HF+ F+ +++
Sbjct: 2284 GFYMVPDNTPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPTHFLEFSNIDE--GEVA 2341
Query: 64 AADREDLF 41
DRED F
Sbjct: 2342 EGDREDTF 2349
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 540 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 574
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 211 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 107
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 653 NTNYLGWRHFINQDFGMYAVAGDEFWEASHQLAHF 687
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 5 NTMKNASRLNLCEQVFSVGGDCWRCSIFHSSKVHEMRRSVNLVVELARVAELHTV 169
NT+K+ N CE S+GG+ I + E RSV V+E V++ +
Sbjct: 4322 NTLKDQKENNTCEYTDSIGGEVNLLVIDENLVTFEEERSVLEVIESFSVSDAELI 4376
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 590 TSTSTSAETPAKTSRSSTPATPWMDAHTT**VAPAIASGYHYTCQNH 450
+S+ST++ T S SST + H T P++ASG+H ++
Sbjct: 51 SSSSTNSPTATAASSSSTNTSGAAIVHPTTSSHPSVASGHHSAANSY 97
>10_08_0261 + 16305388-16306104
Length = 238
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 366 YAVREHEPGVNEQVMIIVFSPSHDELSDMILACVVIS*GDSWGNSLGCVCI 518
Y V P + ++ +PSHD L D +A + S GD G+ C +
Sbjct: 32 YFVYAARPPPRRPTLDLLPNPSHDTLGDREIALLSCSGGDGGGDGEPCYVV 82
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 605 SPVGHTSTSTSAETPAKTSRSSTPATP 525
SP S TS+ TP+ T+R+ +PA P
Sbjct: 534 SPQSPVSARTSSATPSPTARTPSPAPP 560
>05_06_0231 -
26587900-26587980,26588291-26588356,26588452-26588597,
26589182-26589374,26589465-26589515,26590165-26590311,
26590365-26590463,26590557-26590760,26590839-26590887,
26590979-26591074,26591367-26591457,26591753-26591823,
26592170-26592222,26592740-26592828,26593322-26593517,
26593975-26594088,26594217-26594291
Length = 606
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 228 RPRAVGIITLWASVTTRI*STVCNS 154
+PR VGI+ W+S T +I S C+S
Sbjct: 397 KPRYVGIVERWSSKTLQIPSLSCSS 421
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 586 QQVHLPKHLPKHPALA-HLQPLGWMHTQPNELPQLSPQ 476
QQ+ LP P LQ +H QP + PQL PQ
Sbjct: 231 QQLQPQSQLPPQPQQPPQLQLQSQLHPQPQQPPQLQPQ 268
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 604 PQWGTHQQVHLPKHLPKHPALAHLQPL-GWMH 512
P+ H HL +HLP+H + + + GW+H
Sbjct: 154 PEHLQHLPEHLRRHLPEHLRMPEKEEIEGWLH 185
>05_03_0302 +
11984534-11984548,11985365-11985506,11985725-11985845,
11985867-11985972
Length = 127
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 440 LIMGWREDDYHNLLIHARLMFPN 372
+I GW + + +LL H ++M PN
Sbjct: 96 VIFGWFDSSFDSLLKHLKIMLPN 118
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +2
Query: 77 CSIFHSSKVHEMRRSVNLVVELARVAELHTVLHIRVVTDAHKVII 211
C++ SSK+ + + +V E A++ E ++ +R+ T H ++I
Sbjct: 505 CTVSSSSKISNKKLQLLVVDEAAQLKECEGLIPLRLPTLKHAILI 549
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 83 IFHSSKVHEMRRSVNLVVELARVAELHTVLHIRVVTDAHKVIIPTALGRHHEI 241
I + +K+H +R +NL VE+ +L +L + + V +P ++G H +
Sbjct: 535 IQYLNKLHSLRLGINLKVEITWFNQLSNILFMS-LQGCKLVKLPESIGELHSL 586
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 605 SPVGHTSTSTSAETPAKTSRSSTPATPWM 519
+P G T+T+T++ TPA+ + S ATP M
Sbjct: 614 TPSGATTTTTTSVTPAQLALDSLFATPPM 642
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 220 PGTAP*NSPGIYLRATSALSRNDSASSL*DYFL-YQYSSRPIRIRLE*VCTQLGNMSR 390
PG +PG+ ++S S+ +++S +YFL + YSS PIR+ + + T+L M R
Sbjct: 544 PGATMGTAPGLV--SSSFPSKTETSSGS-EYFLEHSYSSMPIRVNVY-IATKLCAMIR 597
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 535 LQPLGWMHTQPNELPQLSPQDITT 464
L P GW+HT P++ LS D+ T
Sbjct: 425 LYPAGWIHTHPSQTCFLSSIDLHT 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,350,887
Number of Sequences: 37544
Number of extensions: 377265
Number of successful extensions: 1134
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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