Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1520
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.082
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.4  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   5.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 307  PKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYG 164
            P  Y+PS  +   +L+     G  + P +G W++    ++  P+++YG
Sbjct: 956  PNFYMPSEPKAPMILVGP---GTGIAPFRGFWHHRLAEIKRRPDLEYG 1000


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 193 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 83
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 193 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 83
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -2

Query: 193 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 83
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 130 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 169


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 330 LTPHSYPLGVSLYAVREHEPGVNEQVMIIVFSPSHDEL 443
           L P + P  +   A  E EPG N  V I    P H  L
Sbjct: 22  LDPPTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRL 59


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 330 LTPHSYPLGVSLYAVREHEPGVNEQVMIIVFSPSHDEL 443
           L P + P  +   A  E EPG N  V I    P H  L
Sbjct: 23  LDPPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRL 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 330 LTPHSYPLGVSLYAVREHEPGVNEQVMIIVFSPSHDEL 443
           L P + P  +   A  E EPG N  + I    P H  L
Sbjct: 23  LDPPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRL 60


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 604 PQWGTHQQVHLPKHL 560
           P W +  Q H+PK +
Sbjct: 242 PYWMSSSQYHMPKEI 256


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 604 PQWGTHQQVHLPKHL 560
           P W +  Q H+PK +
Sbjct: 242 PYWMSSSQYHMPKEI 256


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 102 TLLLWKMLQRQQSPPTEKT 46
           ++ ++ M  R+  PPTEKT
Sbjct: 254 SMTVFLMTIRESLPPTEKT 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,205
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)