Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1519
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 0.53
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 1.6
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 1.6
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 3.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 3.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.0
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 6.6
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 25 6.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 8.7
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.7
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.53
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 227 PVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLI 364
PV S T P P +STP+ QT T V K K LI
Sbjct: 580 PVTASETSPPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLI 625
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 218 ANPPVATSTTGPLQIPQQASTPIVRPEQTCQT 313
A+ ++ ++T P ++ AST IVRP QT
Sbjct: 257 ASGSISKNSTSPSKVKVNASTKIVRPVSAAQT 288
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 219 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLITYVQK 115
ATS PFSL+ V P S ++ +PS Q+
Sbjct: 152 ATSANNPFSLSTDVNPSKPSSNVFSKPSFAAKAQQ 186
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 205 SSRRSQPTCGYIYHGSTADTSTSQHSYR 288
S ++ P G++YHG S + H YR
Sbjct: 17 SRLKTTPRTGWLYHGIEKPESIADHMYR 44
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 215 VANPPVATSTTGPLQIPQQASTP 283
+ P + STT P +PQ +STP
Sbjct: 397 ILKKPSSLSTTDPTLVPQSSSTP 419
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 221 NPPVATSTTGPLQIPQQASTPIVR 292
NP A+STTG I Q S P +R
Sbjct: 77 NPSAASSTTGENSISQTGSGPFLR 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 173 TVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVV 328
T T + N +P+ + TST+ P STPI TS T +
Sbjct: 210 TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSI 261
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +2
Query: 329 QGRDKICKGTLIFSDEFEKNSLKDLT-SWG-AEVRFP------EEPDYPFNVYTTDGTIG 484
+GR CKG+ + +D F ++ L+ L S G +R+P PF V + G +
Sbjct: 43 KGRLYQCKGSGMVADVFSQHQLRQLVGSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLVL 102
Query: 485 FDSGSLIISPVL 520
+G+LI P L
Sbjct: 103 GHNGNLINGPEL 114
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +2
Query: 182 EFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGR 337
+FV +DV+ ++ IP + TP+ +PE T + + R
Sbjct: 131 DFVQSTPKKMDVSLEDISLDDAALTPIPARMQTPLRKPENNPHTGRSALLHR 182
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 355 SLTDFIAALDHCF*RLARLFR-SNDRSAGLLRYLQWTRGRCSHRWV 221
S+ D A+L+ +L + + ++ GL RY +W R R R++
Sbjct: 57 SVRDLRASLNEKINQLTSIIDLTREQVLGLYRYFKWNRERLLERYI 102
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 179 TEFVNENGNPVDVANPPVATSTTG 250
+++ EN N + N P++++TTG
Sbjct: 248 SQYATENANTNSINNSPLSSNTTG 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,730
Number of Sequences: 5004
Number of extensions: 53786
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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