Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1519
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0508 + 4027113-4028522 35 0.059
05_02_0024 - 5702501-5702664,5703219-5703393,5703716-5704099,570... 30 1.3
06_01_0927 - 7155348-7155753,7156053-7156252,7156401-7156501,715... 30 1.7
01_01_0771 - 5982826-5983327,5983424-5984772 30 1.7
01_01_0644 - 4878742-4878758,4879134-4879231,4879913-4879935,488... 29 2.2
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672... 29 3.9
02_01_0752 - 5583757-5584092 29 3.9
12_02_0737 + 22662657-22662733,22662843-22662930,22663873-226639... 28 5.1
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 28 5.1
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 28 5.1
03_05_0456 - 24498212-24499581,24502660-24503071 28 5.1
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 28 6.8
02_05_0092 + 25749070-25750638 27 8.9
02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862 27 8.9
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 27 8.9
>12_01_0508 + 4027113-4028522
Length = 469
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 249 PVVDVATGGLA---TSTGFPFSLTNSVTVHSPLSCLY 148
PV ATGG A TSTGFPFS++ ++ V LS +Y
Sbjct: 60 PVEGAATGGRASHRTSTGFPFSVSLNLAVPPALSSIY 96
>05_02_0024 -
5702501-5702664,5703219-5703393,5703716-5704099,
5705787-5705864,5706015-5706140
Length = 308
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 290 RPEQTCQTSETVVQGRDKICKGTLIFSDEFEKNSLKDLTSW 412
R +T +T E V+G+ K CK L+ F K + TSW
Sbjct: 81 RWHKTGKTREITVRGQPKGCKKILVLYTSFGKKRKAEKTSW 121
>06_01_0927 -
7155348-7155753,7156053-7156252,7156401-7156501,
7156646-7156862
Length = 307
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 359 LIFSDEFEKNSLKDLTSWGAEVRFPEEPDYP 451
+IF DE LK+LTS G E FP +P P
Sbjct: 173 VIFVDETPVRVLKNLTSRGPEFEFPAKPMRP 203
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 184 FCYSPFAVILPISQAILDYIRPEINLISQF 95
FCY+ FAV +P++ Y+R E+ ++ F
Sbjct: 132 FCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>01_01_0644 -
4878742-4878758,4879134-4879231,4879913-4879935,
4880888-4880971,4882011-4882265,4883026-4883615,
4884154-4884331,4884484-4884675,4884792-4884872
Length = 505
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 290 RPEQTCQTSETVVQGRDKICKGTLIFSDEFEKNSLKDLTSW 412
R +T +T +V GR K CK L+ F K+ + T+W
Sbjct: 191 RWHKTGKTRPVMVSGRQKGCKKILVLYTNFGKHRKPEKTNW 231
>06_03_0467 -
21066354-21066501,21066831-21066893,21067223-21067291,
21067666-21067742,21069451-21069558,21070008-21070274,
21071964-21072607,21073370-21073550,21073688-21073834
Length = 567
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +2
Query: 197 NGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLIFSDE 376
N + A+ A + G Q QQ + R +T +T V GR + CK L+
Sbjct: 153 NASSSSSASAAAAVARHGHQQQQQQQRSE-TRWHKTGKTRAVVGGGRQRGCKKILVLYTN 211
Query: 377 FEKNSLKDLTSW 412
F K+ + T+W
Sbjct: 212 FGKHRKPEKTNW 223
>02_01_0752 - 5583757-5584092
Length = 111
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 378 NSSLKIKVPLQILSRPWTTVSDVWHVCSGLTIGVLAC*GICSGP 247
+S+ + V + L+ W V VWH C G++ C G+ P
Sbjct: 69 SSAAVVTVQMPTLAS-WPPVVAVWHSCDNYVCGLVGCVGVDREP 111
>12_02_0737 +
22662657-22662733,22662843-22662930,22663873-22663925,
22664067-22664542,22664645-22664805,22664889-22665086,
22665324-22665531,22665632-22665756,22665897-22666080,
22666184-22666344
Length = 576
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +2
Query: 128 VIKDGLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTC 307
V+ DG + D G WT EF N P D V T TG L++ + +
Sbjct: 135 VVLDGDFNKNDQGCWTSEEFRNHIVRPRD----KVGTVLTGELELSLKNGEAYIHDATFV 190
Query: 308 QTSETVVQGRDKICKGTLIFSDEFEK 385
S+ + G+ ++ G ++ D E+
Sbjct: 191 DNSKFMRSGKFRL--GVMVIDDLGER 214
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 193 IDEFCYSPFAVILPISQAILDYIRPEINLISQF 95
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 193 IDEFCYSPFAVILPISQAILDYIRPEINLISQF 95
+ FCY+ FAV +P++ Y+R ++ F
Sbjct: 52 LSAFCYTEFAVDMPVAGGAFSYLRVTFGELAAF 84
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 205 IPIFIDEFCYSPFAVILPISQAILDYIRPEI 113
+ + FCY+ FAV +P++ Y+R E+
Sbjct: 118 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 148
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 224 PPVATSTTGPLQIPQQASTPIVRP 295
PPV++ST+ P +P P +RP
Sbjct: 2 PPVSSSTSRPASLPSSPHRPALRP 25
>02_05_0092 + 25749070-25750638
Length = 522
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 224 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSET 322
PP T + P+ I ++ P V P Q SET
Sbjct: 106 PPAVTPSVAPVYIQMPSANPAVAPVQIQMPSET 138
>02_02_0705 - 13124955-13125212,13125309-13125389,13125539-13125862
Length = 220
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 219 ATSTGFPFSLTNSVTVHSPLSCLYPRPSLIT 127
A+ G + L+NS+ + + SC +P P +I+
Sbjct: 92 ASVAGLAYFLSNSLAIENYFSCFFPLPIVIS 122
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 157 LPISQAILDYIRPEINLISQF*LSISVSERPNAVFGFSD 41
+ I + LD+IR +I L+SQ L S + N ++G D
Sbjct: 435 ISIKKLRLDWIRGKIGLVSQEPLLFMASIKDNIIYGKKD 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,726
Number of Sequences: 37544
Number of extensions: 340011
Number of successful extensions: 941
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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