Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1519
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)                   30   1.3  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 47  KAKNGVWTFRDRNAQLKLGDKIYFWTYVI-KDGLGYRQDNGE 169
           K K   W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 25  KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
          Length = 325

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 179 TEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 304
           T+ +    N V V   P+      PL +P  A TP+ RP  T
Sbjct: 98  TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDT 139


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 425 RFPEEPDYPFNVYTTDGTIGFDSGSLIISPVLLESKFSEDKIYQDLDLTNRCTGQIDTTE 604
           R    PDY F  Y  + T   ++ + ++SP     +  ++ IYQD +   R   ++  +E
Sbjct: 542 RITRLPDYYFPQYLNELTCDMETSASVVSPFCAFGRCFQNSIYQDENTFPRYANELLCSE 601


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 191  NENGNPVDVANPPVATSTTGPLQIP 265
            N  GN      PPV T TT P   P
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 199  WESSRRSQPTCGYIYHGSTADTSTSQHSYR*TGTDVPNVRNSGPRPR*N 345
            W+SS RSQP  G     +  ++S  Q +   TGTD P  + +  R + N
Sbjct: 1084 WKSSSRSQPNTGTDEPKAQCNSSRPQPN---TGTDEPKAQCNSSRTQPN 1129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,676
Number of Sequences: 59808
Number of extensions: 394663
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)