Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1519
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 32 0.28
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 31 0.49
AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical ... 30 1.1
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical... 29 2.6
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 3.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 3.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 4.6
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 4.6
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 4.6
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 28 6.1
Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 27 8.1
AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a prot... 27 8.1
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 140 GLGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQ 301
G G RQ N E + V E NP N P AT +GP+ P + P+ +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMP-PLNGTAPLPSGQQ 747
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 323 VVQGRDKICKGTLIFSDEFEKNSLKDLTSWGAEVRFPEEPDYPFNVYTTDGTIGFDSGSL 502
V+ G + TLI D+ ++L+ L ++ E P Y Y DG++ + + L
Sbjct: 139 VIGGFFAVMVETLIAKDKMLDDNLRKLIFENYQLLISELPKYNITPYNLDGSVNWGNFGL 198
Query: 503 IISPVLLES 529
++ V L S
Sbjct: 199 LVIAVFLNS 207
>AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical
protein Y116A8A.4 protein.
Length = 441
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +2
Query: 50 AKNGVWTFRDRNAQLKLGDKIYFWTYVIKDGLGYR------QDNGEWTVTEFVNENGNPV 211
A NGV D KLGD ++F+ Y D L ++ +D G T T + E G P+
Sbjct: 181 AFNGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 161 NGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPI 286
N EWTV EF ++ GN D N + + P + + +TP+
Sbjct: 47 NWEWTVNEFWDQTGNVADNLNGTITWLRSNPAGL--KLNTPV 86
>AC024859-20|ABA00160.2| 322|Caenorhabditis elegans Hypothetical
protein Y71H2AM.24 protein.
Length = 322
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +2
Query: 224 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSETVVQGRDKICKGTLIFSDEFEKNSLKDL 403
PPV ST PL+IP+ P + SE VV G K I + E SLK++
Sbjct: 136 PPVVKSTEEPLKIPEIQKIPDCLSAEP-SVSEHVVDGLKNTTKS--ISGTKGEDISLKNI 192
Query: 404 TSWGAEVRFPEEP 442
S ++F EP
Sbjct: 193 DS--CRLQFDFEP 203
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 143 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 304
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 143 LGYRQDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 304
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 295
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2324
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 295
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 295
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQ 271
VN N PV A PPV P Q PQQ
Sbjct: 415 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 442
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQ 271
VN N PV A PPV P Q PQQ
Sbjct: 401 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 428
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 188 VNENGNPVDVANPPVATSTTGPLQIPQQ 271
VN N PV A PPV P Q PQQ
Sbjct: 404 VNANPPPVQNAQPPVQQQQQPPQQPPQQ 431
>Z81094-6|CAB03154.1| 666|Caenorhabditis elegans Hypothetical
protein F58G11.3a protein.
Length = 666
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 185 FVNENGNPVDVANPPVATSTTGPLQIPQQAST 280
F +G+ + NPPVA S PL P AS+
Sbjct: 191 FGKSSGSNANPTNPPVAPSIQRPLMRPSTASS 222
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 146 GYRQDNGEWTVTEFVNENGNPVDVANPPVATS 241
GY Q + EF+ + GN ++ PP+A +
Sbjct: 121 GYPQTTESKILQEFITQQGNRLETVRPPMAVT 152
>AC199172-11|ABO33270.1| 311|Caenorhabditis elegans F-box a protein
protein 50, isoforma protein.
Length = 311
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 131 IKDGLGYRQDNGEWTVTEFVNENGNPVDVA 220
I+D L R+ +W V F+ N NP+++A
Sbjct: 239 IRDDL-LRRSTFQWCVIRFLRPNANPIEIA 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,413
Number of Sequences: 27780
Number of extensions: 301427
Number of successful extensions: 972
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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