Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1519
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.11 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.11 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 224 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 319
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 224 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 319
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 408 LVKSLRLFFSNSSLKIKVPLQILSRPWTT 322
           ++ +  LF+   SL+I +P +    PW T
Sbjct: 117 IILAWALFYLLVSLRIDLPWRTCGNPWNT 145


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 408 LVKSLRLFFSNSSLKIKVPLQILSRPWTT 322
           ++ +  LF+   SL+I +P +    PW T
Sbjct: 170 IILAWALFYLLVSLRIDLPWRTCGNPWNT 198


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 216 TSTGFPFSLTNSVTVHSPLSCLYP 145
           T   F FS+    T H+PLS  +P
Sbjct: 304 TPGSFNFSMAALATEHTPLSVKFP 327


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 211 RRSQPTCGYIYHGSTADTS 267
           R  + TC Y YH ST + S
Sbjct: 382 RGKEKTCYYPYHPSTQEDS 400


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 211 RRSQPTCGYIYHGSTADTS 267
           R  + TC Y YH ST + S
Sbjct: 382 RGKEKTCYYPYHPSTQEDS 400


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 116 FWTYVIKDGLGYRQDN 163
           F+T V+ D + YR DN
Sbjct: 248 FFTRVVTDTIKYRNDN 263


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 371 DEFEKNSLKDLTSWGAEVRF-PEEPD 445
           +EFE+N L+ L S+  +V F P   D
Sbjct: 289 EEFERNRLQLLESFKRKVNFYPNNQD 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,009
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)