Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1516
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   3.0  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.0  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   7.0  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   9.2  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 241 NQSDAIYNLRTFISQHSYSKSFEN*LSSRYCNKFY--*VAILSNNGF-KKTNLRDPRPPN 71
           N  DA+ + R  I +H  +++  N   SR+  ++Y   V  L NNG+ +K     P  P 
Sbjct: 213 NICDAVQSSRNGICRHVDARAMVNLNHSRWERRYYARQVTYLHNNGYLRKCLTFVPNSPE 272

Query: 70  SC 65
            C
Sbjct: 273 RC 274


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 295 SRSAQNNFRITEINYASVNQSDAIYNLRTFISQH 194
           S+  Q N  I+++N    N   A+Y   TFI++H
Sbjct: 260 SQIQQANVSISDLNAVLENTRSALYTELTFIAEH 293


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 341 TSLRHRRTVLSANNLIKIC 285
           +SL HRR +L++++ +KIC
Sbjct: 307 SSLSHRRKLLTSHSTLKIC 325


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 173 FKGL*IAVL*NKSAKIINCI*LIDRCIIYFCNSK---IVLC 286
           FKGL I V+ + + ++I C+ L++   +  C+ K   I+LC
Sbjct: 794 FKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDLKPENILLC 834


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 320 TVLSANNLIKICTKQFSNYRNKLCICQSVRC 228
           T  SA +L+K C+   ++Y+N LC     RC
Sbjct: 343 TSWSAYSLLKNCSDCANSYKNWLCASVIPRC 373


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 637 SNCWRGIGTSGLHQ 596
           SNCWR I T+ LH+
Sbjct: 185 SNCWRPIATNLLHR 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,409
Number of Sequences: 5004
Number of extensions: 36825
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)