Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1515
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.039
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    30   0.28 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    28   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.6  
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    27   3.4  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   3.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   3.4  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   3.4  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    26   6.0  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   7.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.9  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
 Frame = +1

Query: 220 PIVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 390
           P  H     H  ++   P         P +H    HH   P  V H+    DH P K+E 
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422

Query: 391 SYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDG 495
             S  + H+   +   +    D ++      Q DG
Sbjct: 423 HCSCHEDHSVHERPSAKGALEDYIQTFVETFQIDG 457



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
 Frame = +1

Query: 292 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE-------FSYSVEDPHTG---DHKS-QH 438
           P +H    HH   P  V H+    DH P K+E         +S   PH G   DHK  +H
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPDHKPWKH 366

Query: 439 E--TRDGDVVKG-EYSLLQPDGSIRKVEYTADHHNGFNAIVHN-SEPD 570
           E     G  ++   +++ +PD    K E    H      + HN ++PD
Sbjct: 367 EEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPD 414



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 292 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 387
           P +H    HH   P  V H+    DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 292 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 387
           P +H    HH   P  + H+    DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
 Frame = +1

Query: 316 HHAAIPIAVEHSDHVEDHAPAKYE-----FSYSVEDPHTG---DHKS-QHE--TRDGDVV 462
           HH   P  V H+    DH P K+E       +    PH G   DHK  +HE     G   
Sbjct: 261 HHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFP 320

Query: 463 KG-EYSLLQPDGSIRK-VEYTADHHNGFN-AIVHN-SEPD 570
           +   ++  +PD    K  E+ + HH+ F+  + HN ++PD
Sbjct: 321 RPVPHNGTKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 566 GSELCTIALNPLWWSAVYSTLRMEPSGWSREYSPFTTSPSRVS 438
           G  +C + L  LW  ++Y+TLR    G + E  PFT S S VS
Sbjct: 12  GIPICGVILLILWGYSLYNTLRFMVPGKATE--PFTLSLSDVS 52


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 156 PSFELCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSN 335
           PS +  C S + +S   S   S CS+  +G          S   + C  C+S  P C SN
Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC--CTSEKPSCCSN 290


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 315 HDWSMLHRAEVLDYWRSMYI 256
           +D+S +   E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568


>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 162 FELCCSSTDSRSPFDSTCRSYCSR 233
           F+   S +DS S  DS+C S CSR
Sbjct: 75  FDESSSDSDSDSDSDSSCSSCCSR 98


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 250 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 411
           S Y+H   VV+     Q  P+  H   P +   SDH +  A  K  F  SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 278 SNTSALCNMLQSCTTLRFQLPSNTPIMSKIMLPRSMSSHIPSR 406
           S  S  C  + S      +   NT  +S + LPR++S+ IP++
Sbjct: 181 SGRSIDCQWMDSVALNLSRYYGNTEALSSLPLPRNLSADIPAK 223


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 335 LPSNTPIMSKIML--PRSMSSHIPSRIPTPAITSPN 436
           +PSNT I S   L  P   S++IP+ +PT  + S N
Sbjct: 455 VPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 290 ALCNMLQSCTTLR-FQLPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*K 466
           +LC+++ S +++  F    +   M+   LP   +    S    P   SPN +P++    +
Sbjct: 33  SLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNHQFGS----PVAASPNQQPLVESQNR 88

Query: 467 ANTLYSSLMV 496
            N  Y+SL++
Sbjct: 89  RNVTYASLVI 98


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 335 LPSNTPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPV 448
           +P  T +  +  LP   S+ + S+  TP+ ++  T PV
Sbjct: 185 IPEGTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 DHVEDHAPAKYEFSYSVEDPHTGDHKSQHETR 447
           D+V++H P   E +   ++    DH + ++TR
Sbjct: 2   DNVQEHDPDTQEHNNETQNHKQEDHSNSYQTR 33


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = +3

Query: 102 PKHRSP*QAFSSSNGTLYPSFELCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYTCFASSP 281
           P   S   + SSS  +  PS     SST S +   ST  SY S     +       +SS 
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSS 228

Query: 282 TLQPCATCSSRAPRCDSN 335
           TL   +  +S  P   S+
Sbjct: 229 TLTSSSLSTSSIPSTSSS 246


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 115 ERCFGKTQHGRGPRL*H 65
           +RCFGKT  G  P L H
Sbjct: 415 KRCFGKTNDGSNPCLYH 431


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +1

Query: 28  AVVCSILAICQGG----VIDEGHGHAVSSQSIVRHDKPFHQATAHYTPVLSYAAPVL 186
           A++C +L I +G     +++  +   V  + +  H+ P+ + +AHY+ +++  +PVL
Sbjct: 814 ALLCILLDILKGYDNQIILNSTYNEFV--EVLRNHELPYSEWSAHYSALVNRISPVL 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,295
Number of Sequences: 5004
Number of extensions: 65774
Number of successful extensions: 269
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)