Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1515
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 355 HVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHN 534
           H+ D  P   E  Y      T  H+   ETR     KG   + +P GS+R    + D+ N
Sbjct: 166 HIRDVGP---EDGYKTYQCRT-KHRLTGETRLS-ATKGRLVITEPVGSVRPKFPSMDNIN 220

Query: 535 GFN 543
           G +
Sbjct: 221 GLS 223


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 122 SWRTMLWEDTAWPWPSS 72
           SW T++W D+   W  S
Sbjct: 93  SWMTLMWTDSHLSWKPS 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 352 DHVEDHAPAKYEFSYSVEDP 411
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 352 DHVEDHAPAKYEFSYSVEDP 411
           DH  DHAP + E  + V DP
Sbjct: 340 DH-GDHAPKQTEVRFKVHDP 358


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 45 NRADYSNFEEHVEM 4
          N A++SNFE+ V M
Sbjct: 26 NAANFSNFEDRVTM 39


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 700 LQGPEVKHWSR 668
           +QG + +HWSR
Sbjct: 15  IQGTQAQHWSR 25


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 648 SCPCDSTLLQCFTSGP 695
           S  C    ++CFT GP
Sbjct: 289 STTCSGHTVRCFTGGP 304


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 700 LQGPEVKHWSR 668
           +QG + +HWSR
Sbjct: 15  IQGTQAQHWSR 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,912
Number of Sequences: 438
Number of extensions: 4654
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)