Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1512
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   3.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.7  

>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 123 ISFFDLLLLTKAPEYLIDSGKNE 55
           + FF +L L ++P YL   G+NE
Sbjct: 193 LMFFGMLFLPESPRYLAVKGRNE 215


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +3

Query: 339 YTRYYKI-QFKKNTNTQIF*IFRNY-YSFHICFHQHNNEGEIDVYSE*KIVVIKFFNCAI 512
           +T+ +++  F K T T I      Y     IC  Q+N E  +D+Y+E K+  I       
Sbjct: 314 FTKAWEVFNFMKFTATSISPSAETYGLMIQICSSQYNPEKALDLYNEMKLRPIDPLTPTT 373

Query: 513 LFWLRLAHELA 545
                L H LA
Sbjct: 374 FVINNLIHALA 384


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 220  TASLTIYIGNSLTNLLLCRSPVSYAAH*TNYVDFFL 113
            TA L  YI   +T   LC SP  Y  H   + DFF+
Sbjct: 1344 TAWLPHYIYFWITLTALCISPFLYNPHQFAWTDFFV 1379


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -1

Query: 674 NVGVFKELLKVYACVPESNPIRANIVNMAGGLPTTLT 564
           N+ ++K  +  + C+P ++ +   I  + GGL  +L+
Sbjct: 329 NIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,798
Number of Sequences: 5004
Number of extensions: 50375
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)