Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1509
         (710 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    45   0.002
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    41   0.035
UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropelli...    37   0.56 
UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse tr...    36   1.3  
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t...    34   4.0  
UniRef50_Q22N51 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    33   6.9  
UniRef50_Q9W3W6 Cluster: CG14438-PA, isoform A; n=1; Drosophila ...    33   9.2  
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    33   9.2  

>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=5;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 1030

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 639  KGKVEGKRSRGRSPTRWTDLIKYVCLAHC--KINDYTRSAKHRATWRRIVRASVLQDPTD 466
            +GKV G R RGR P RW D I   C A    ++ D +R A  R TW  I     +Q P+ 
Sbjct: 967  EGKVTGNRPRGRPPKRWLDCISEDCKARSIPRLTDASRLAADRKTWHTI----TIQKPSR 1022

Query: 465  A*PRP 451
              PRP
Sbjct: 1023 G-PRP 1026


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 40.7 bits (91), Expect = 0.035
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 699  RFFGAHHLVNKDSIERVGGSKGKVEGKRSRGRSPTRWTDLIKYVCLAH--CKINDYTRSA 526
            R+FG  + +N      +    G + GKR RGR   RWTD IK  C       +   TR  
Sbjct: 861  RYFGHINRMNSKRYPHIL-LNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLT 919

Query: 525  KHRATWRRIVR 493
            + R  W+ IV+
Sbjct: 920  EDRKVWQAIVK 930


>UniRef50_UPI0000E4898C Cluster: PREDICTED: similar to fibropellin
           Ia; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to fibropellin Ia - Strongylocentrotus
           purpuratus
          Length = 1096

 Score = 36.7 bits (81), Expect = 0.56
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 630 VEGKRSRGRSPTRWTDLIKYVCLAH--CKINDYTRSAKHRATWRRIVR 493
           V GK  RGR   RWTD IK  C       +   TR  + R  WR IV+
Sbjct: 22  VHGKHPRGRPAKRWTDCIKADCNNRQVDSLTKATRLTEDRKVWRTIVK 69


>UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=1; Danio rerio|Rep: PREDICTED:
           similar to reverse transcriptase-like - Danio rerio
          Length = 249

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = -3

Query: 696 FFGAHHLVNKDSIERVGGSKGKVEGKRSRGRSPTRWTDLIK 574
           FFG  H++  +S+E    + G V G R RGR  TRW D IK
Sbjct: 193 FFG--HIMQTNSME-TAFTLGAVSGSRRRGRQRTRWLDTIK 230


>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
           taurus|Rep: Reverse transcriptase-like - Bos taurus
           (Bovine)
          Length = 335

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 699 RFFGAHHLVNKDSIERVGGSKGKVEGKRSRGRSPTRWTD 583
           ++FG H +   DS+E+     GK+EG+R RGR   RW D
Sbjct: 260 QYFG-HLMRRADSLEKTL-MLGKIEGRRRRGRQRMRWLD 296


>UniRef50_Q22N51 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1338

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 615  SRGRSPTRWTDLIKYVCLAHCKINDYTRSAKHR 517
            +R  +P+ ++DL+KY+     K+NDYT+   +R
Sbjct: 1133 ARNETPSDYSDLLKYLLKNPAKVNDYTKLTSYR 1165


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 639 KGKVEGKRSRGRSPTRWTDLIK-YVCLAHCKINDYTRSAKHRATWRRIVR 493
           + +VEGKR RGR   +W D IK +  L +    +  R A+ R  WR+  R
Sbjct: 352 ESQVEGKRKRGRQRKQWFDNIKEWTGLTY---TEAKRLAQDRNNWRKTTR 398


>UniRef50_Q9W3W6 Cluster: CG14438-PA, isoform A; n=1; Drosophila
            melanogaster|Rep: CG14438-PA, isoform A - Drosophila
            melanogaster (Fruit fly)
          Length = 3313

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 671  IKTPLSGLGGPKAKSRAKDLADDLQHDGPTS*NMSVW 561
            IKTP+S  G P  K RA D  +D + + PT  N + W
Sbjct: 907  IKTPISSTGNPALKRRADDDVED-KLENPTKKNCAKW 942


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 624 GKRSRGRSPTRWT-DLIKYVCLAHCKINDYTRSAKHRATWRRIVRASVLQ 478
           G+RS GR PTRWT DL+K         + + ++A+ R+ W+ +  A V Q
Sbjct: 449 GRRSVGRPPTRWTDDLVKVAG------STWMQAAQDRSLWKSLGEAFVQQ 492


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,525,520
Number of Sequences: 1657284
Number of extensions: 15976651
Number of successful extensions: 37888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37879
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)