Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1509
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0295 - 2154069-2155483,2155561-2155708                           31   0.90 
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931...    30   2.1  
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339...    28   6.4  
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832...    28   8.4  

>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 250 SLVLCRSPPGLVPPSCLFLPQNSNTVFRSEGQDSRCNIHK 131
           SL L   P GL+    LFLP+  N++ + +G+  RC++ +
Sbjct: 209 SLALAAVPAGLLTLGALFLPETPNSLIQ-QGKVERCDVEQ 247


>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
            21193286-21193356,21193385-21193441,21193442-21194056,
            21194168-21194237,21194470-21194745,21194916-21195130,
            21195224-21195529,21195750-21195813,21195902-21196141,
            21196306-21196415
          Length = 1214

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 53   MITVAHRHPNYISDSDALPILAWMGSLMYVTPAIL 157
            ++T+AHR P  ++DSD + +L++   + Y TPA L
Sbjct: 1157 VVTIAHRVPT-VTDSDKVMVLSYGKLIEYDTPAKL 1190


>01_05_0293 -
           20532559-20532572,20532573-20532798,20532926-20533960,
           20534670-20534996
          Length = 533

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 534 ECNHLFCSEPDRHIL*GRSIVLEIVREIFC--PRLCLWTPQ 650
           E  H  C+   RH+  GR+++ EIV+ I    PR C +T Q
Sbjct: 371 ELQHYNCAGCHRHLDAGRTMLQEIVQTIGWNKPRFCAYTGQ 411


>03_06_0417 -
           33782577-33782687,33782996-33783052,33783110-33783205,
           33783252-33783284,33783543-33783599,33783968-33784060,
           33784308-33784395,33784812-33784835,33784956-33785164
          Length = 255

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 586 GPSCWRSSARSFALDFAFGPPNPLNGVFIYQVMCPKEP*G 705
           GP+   ++A S ++D+   PPNP N V  + V     P G
Sbjct: 12  GPTPPSAAAASSSVDWHLRPPNPKNPVVFFDVTIGSIPAG 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,755
Number of Sequences: 37544
Number of extensions: 451890
Number of successful extensions: 1098
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)