Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1509
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    29   4.3  
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    29   4.3  

>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/75 (20%), Positives = 36/75 (48%)
 Frame = -2

Query: 592 MDRPHKICLSGSLQNK*LHSLCETPCHMASHRESIGIAGSD*CMTTTTLSRVYD*EDGIH 413
           +D+P ++    +LQN+    + +TP + ++H+  + +      M +T L      + G  
Sbjct: 152 IDQPQQVVFQANLQNRSNRVMQQTPNNSSNHQNHLSLKQPHLSMNSTQL------QSGFQ 205

Query: 412 VQKNHEPNYELNKST 368
                 P++++N +T
Sbjct: 206 TGNRMMPSFQVNPTT 220


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 621 KRSRGRSPTRWTDLIKYVCLAHCKIND----YTRSAKHRATWRRIVRAS 487
           KR  GR P RW D ++               ++  AK R  W+ ++RA+
Sbjct: 150 KRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIRAA 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,317,293
Number of Sequences: 27780
Number of extensions: 382937
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)