Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1509
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 154 PVLQTGTQYYCFAAEIDRTVV 216
           P +QT T YY F+  I   ++
Sbjct: 69  PAMQTATNYYLFSLAISDLIL 89


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 588 TDLIKYVCLAHCKIND 541
           T +I  VC  +CK+ND
Sbjct: 235 TRVIPQVCSGNCKLND 250


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 588 TDLIKYVCLAHCKIND 541
           T +I  VC  +CK+ND
Sbjct: 235 TRVIPQVCSGNCKLND 250


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 145 TGYPVLQTGTQYYC 186
           +GYP ++ GT  YC
Sbjct: 23  SGYPSIRQGTTSYC 36


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 656  SGLGGPKAKSRAKDLADDLQHDGP 585
            +G+GG     R  DL D+L +  P
Sbjct: 1625 TGVGGATLDKRRPDLRDELGYIAP 1648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,274
Number of Sequences: 438
Number of extensions: 4898
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)