Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1509
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing pr...    32   0.33 
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin...    30   1.7  
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin...    30   1.7  
At1g74510.2 68414.m08632 kelch repeat-containing F-box family pr...    29   2.3  
At1g74510.1 68414.m08631 kelch repeat-containing F-box family pr...    29   2.3  
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro...    28   7.0  
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro...    28   7.0  

>At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429:Methyl-CpG binding
           domain
          Length = 155

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 322 DHKK*NVIPSLMLYNIVGNNELFTSLVLCRSPPGLVPPSCLFLPQNSNT 176
           D KK  +IPS+  YNI+   +L T  V C +  G  P     +PQ+  T
Sbjct: 6   DCKKWRLIPSMQHYNIIKETQLQTPFV-CGTTSGWTPNMSCNVPQDGTT 53


>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 478

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 669 KDSIERVGGSKGKVEGKRSRGRSPTRWTD 583
           KD  +  GG KGK EGK ++G   T  TD
Sbjct: 198 KDGKKGKGGEKGKKEGKENKGGGKTGKTD 226


>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 577

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 669 KDSIERVGGSKGKVEGKRSRGRSPTRWTD 583
           KD  +  GG KGK EGK ++G   T  TD
Sbjct: 297 KDGKKGKGGEKGKKEGKENKGGGKTGKTD 325


>At1g74510.2 68414.m08632 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 451

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 567 CLAHCKINDYTRSAKHRATWRRIVRASVL 481
           CLAHC ++D+   A    T+R +++ S L
Sbjct: 107 CLAHCSLSDFGSIASTNRTFRSLIKDSEL 135


>At1g74510.1 68414.m08631 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 451

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 567 CLAHCKINDYTRSAKHRATWRRIVRASVL 481
           CLAHC ++D+   A    T+R +++ S L
Sbjct: 107 CLAHCSLSDFGSIASTNRTFRSLIKDSEL 135


>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 493 SHDATPCGTVFRRASVIIYFAVSQTDIFYEVGPSCWRSSA 612
           S DA  C  VFR+   I+  A SQ  + + V PSC+  S+
Sbjct: 76  SVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSS 115


>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 493 SHDATPCGTVFRRASVIIYFAVSQTDIFYEVGPSCWRSSA 612
           S DA  C  VFR+   I+  A SQ  + + V PSC+  S+
Sbjct: 76  SVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSS 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,296
Number of Sequences: 28952
Number of extensions: 347730
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)