Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1508
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.23 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   2.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 271 HSTETLSLRTDRDSEREGERVIEIDKEGEGVMIKVF 164
           HS + LS ++D D+E   E+ + + K      IK F
Sbjct: 167 HSVDELSGKSDNDAEEYDEQSLRVPKVNSHGKIKTF 202


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 KNLYHYPLPLFVYLYHSLSLSFTISICPQT 253
           +N +   LPL   L ++L +  T+++C  T
Sbjct: 274 QNFHDIFLPLLCILTNTLEILITVTVCELT 303


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 164 KNLYHYPLPLFVYLYHSLSLSFTISICPQT 253
           +N +   LPL   L ++L +  T+++C  T
Sbjct: 99  QNFHDIFLPLLCILTNTLEILITVTVCELT 128


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 636 RTKRSSIIDFCNINGNRPHV*EVTSSPRPCAVRLTTQH 523
           R K   I + C  + N+P++    +S  P      TQH
Sbjct: 48  RVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHDFTQH 85


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 636 RTKRSSIIDFCNINGNRPHV*EVTSSPRPCAVRLTTQH 523
           R K   I + C  + N+P++    +S  P      TQH
Sbjct: 48  RVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHDFTQH 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,603
Number of Sequences: 336
Number of extensions: 2633
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)