Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1508
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    28   7.2  
04_04_0143 - 23091613-23092467                                         27   9.6  
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603...    27   9.6  

>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 262 ETLSLRTDRDSEREGERVIEIDKEG 188
           E   L  DRD   EGE V+ ID EG
Sbjct: 29  ERSGLAADRDGGEEGEVVVRIDGEG 53


>04_04_0143 - 23091613-23092467
          Length = 284

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 7   VILDRFGLVLKPCLTSNLYILVLY*VSMYIFECLNKPSNFGS 132
           VI DRF  VL   +    + LV +    ++F+   +P NF S
Sbjct: 42  VIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSS 83


>01_07_0081 -
           40959279-40959375,40959463-40959589,40960138-40960339,
           40962414-40963361
          Length = 457

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 191 LFVYLYHSLSLSFTISICPQTKSLCAMGNRHSCILYI 301
           +FVY +  L L   I   P  K LCA+  +   I+ +
Sbjct: 216 IFVYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLV 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,268
Number of Sequences: 37544
Number of extensions: 254254
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)