Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1508
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    29   2.1  
Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U10438-14|ABB88242.1|  441|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.6  
L10986-8|AAA28013.2|  286|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z70780-2|CAA94821.1|  468|Caenorhabditis elegans Hypothetical
           protein F46B6.4 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 409 KSEALTTAQLSQSIRISCRTKQSVHKCVITVKY*IVLSMLC 531
           K  A  T++ + S+RISC+T   +H+ +  +   + +   C
Sbjct: 363 KESAFPTSESNNSVRISCKTGDGMHELIDVINDKVTMVTKC 403


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = +3

Query: 324  NIPTKSKRTCSSDEYL----------LDVRIGPTTFGPEIRGANYCTTESINSNL 458
            N+PT S  +  SDEY+          LD R+G    G +   A Y T +++ S+L
Sbjct: 1340 NVPTSSSSSSDSDEYVHKFQVVPPETLDDRVGSPGAGSDEGSAGYATDDTVMSSL 1394


>Z48045-7|CAA88098.1|  329|Caenorhabditis elegans Hypothetical
           protein C41C4.1 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 209 HSLSLSFTISICPQTKSLCAMGNRHSCILYIRVKYKHNEHS 331
           ++++  + ISIC   KS+  + +  +C+LY   K+  N  S
Sbjct: 77  YAIAPKYNISICRIKKSMSTLMSGVACVLYDTGKFMRNNRS 117


>U10438-14|ABB88242.1|  441|Caenorhabditis elegans Hypothetical
           protein B0280.11 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 602 TLTGIDRMSKRSQVHLDLVRSDSPHSIDN 516
           T+T I  +S +S +   L  SDSPHS+++
Sbjct: 195 TVTSIPSISTKSTILAQLPLSDSPHSLES 223


>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 PLPLFVYLYHSLSLSFTISIC 244
           P+P ++Y  H L+LS++  IC
Sbjct: 390 PIPYWLYKLHGLNLSYSCEIC 410


>L10986-8|AAA28013.2|  286|Caenorhabditis elegans Hypothetical
           protein F10E9.2 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 292 YT*VSVSHSTETLSLRTDRDSEREGE 215
           YT + VS  T  ++LRT + S  EGE
Sbjct: 181 YTLLGVSGKTHMITLRTQKSSSEEGE 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,177
Number of Sequences: 27780
Number of extensions: 251505
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)