Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1508
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    34   0.092
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    34   0.092
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format...    28   6.1  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    28   6.1  
At2g47030.1 68415.m05876 pectinesterase family protein contains ...    27   8.0  
At1g77610.1 68414.m09036 glucose-6-phosphate/phosphate transloca...    27   8.0  
At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate transloca...    27   8.0  

>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 628 TVFYHRFL*H*RESTACLRGHKFTSTL----CGPTHHTALTIQSNILLL 494
           T+ +HRF  H  +S   L  H+FT+ L      P HH   T  +N+LLL
Sbjct: 165 TLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLL 213


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 628 TVFYHRFL*H*RESTACLRGHKFTSTL----CGPTHHTALTIQSNILLL 494
           T+ +HRF  H  +S   L  H+FT+ L      P HH   T  +N+LLL
Sbjct: 165 TLHHHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLL 213


>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +2

Query: 194 FVYLYHSLSLSFTISICPQTKSLCAMGN-RHSCILYIRVKYKHNEH-----SDKKQTNLF 355
           +   YHSLS  FT           A G+     +LY+  K  H+ +     S+K    L+
Sbjct: 360 YTKFYHSLSKDFTDEKPMAWSHFNAEGDVEFKAVLYVPPKAPHDLYESYYNSNKANLKLY 419

Query: 356 VRRIFARRE 382
           VRR+F   E
Sbjct: 420 VRRVFISDE 428


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +2

Query: 194 FVYLYHSLSLSFTISICPQTKSLCAMGN-RHSCILYIRVKYKHNEH-----SDKKQTNLF 355
           +   YHSLS  FT           A G+     +LY+  K  H+ +     S+K    L+
Sbjct: 360 YTKFYHSLSKDFTDEKPMAWSHFNAEGDVEFKAVLYVPPKAPHDLYESYYNSNKANLKLY 419

Query: 356 VRRIFARRE 382
           VRR+F   E
Sbjct: 420 VRRVFISDE 428


>At2g47030.1 68415.m05876 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 588

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 248 QTKSLCAMGNRHSCILYIRV-KYKHNEHSDKKQTNLFV 358
           Q    C   NR  CI+YI+   Y+      KK+ N+F+
Sbjct: 292 QAVDACPENNRGRCIIYIKAGLYREQVIIPKKKNNIFM 329


>At1g77610.1 68414.m09036 glucose-6-phosphate/phosphate
           translocator-related similar to
           glucose-6-phosphate/phosphate-translocators from
           [Mesembryanthemum crystallinum] GI:9295277, [Solanum
           tuberosum] GI:2997593, [Pisum sativum] GI:2997591;
           contains Pfam profile PF00892: Integral membrane protein
          Length = 336

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 62  ISLSCIEFLCISLSALINLRTLEV 133
           +S+SC+ F+C S+ A I ++ L++
Sbjct: 40  LSVSCVHFICSSIGAYIVIKVLKL 63


>At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate
           translocator-related similar to glucose 6
           phosphate/phosphate translocators from Pisum sativum]
           GI:2997591, [Mesembryanthemum crystallinum] GI:9295277,
           [Solanum tuberosum] GI:2997593; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 341

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 62  ISLSCIEFLCISLSALINLRTLEV 133
           +S+SC+ F+C S+ A I ++ L++
Sbjct: 46  LSVSCVHFICSSIGAYIVIKVLKL 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,030
Number of Sequences: 28952
Number of extensions: 220251
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)