Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1506
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.7  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.0  
AM269505-2|CAK30049.1|   12|Tribolium castaneum mlpt peptide 2 p...    22   4.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.3  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 85  MPENSLRSMLASKYFIMFYICEIYCYV 5
           +PE  +  +   KY+ + Y C I  Y+
Sbjct: 316 VPEEQVYHLEIEKYYNILYFCRIMVYL 342


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 676 APCPCSLKRLNPFTPIDQLKSEPWATPEQLAVVVK 572
           APC    +RL    P+    S P  TP+++  + K
Sbjct: 56  APCDPVGRRLKSLAPLVLRGSCPQCTPQEMKQIQK 90


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = -3

Query: 373 PEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEE 236
           PE +       +  + SEP        + S  +KP  T  PE   E
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNE 438


>AM269505-2|CAK30049.1|   12|Tribolium castaneum mlpt peptide 2
           protein.
          Length = 12

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 159 GGKLRPSGQY 188
           GGKL P+GQY
Sbjct: 3   GGKLDPTGQY 12


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 613 EPWATPEQLAVVVK 572
           EPW  PEQ+    K
Sbjct: 459 EPWTAPEQVQRAAK 472


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,937
Number of Sequences: 336
Number of extensions: 2793
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)