Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1506
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    31   0.12 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.82 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.9  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    26   4.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    26   5.8  
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    25   7.6  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 30/111 (27%), Positives = 46/111 (41%)
 Frame = -3

Query: 580 VVKEVQKRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFVQIEQLLVNAGYSYE 401
           V  E+     A L     S Q+  +NK +EF+          G       L   +G S  
Sbjct: 614 VTSEISSTSLASLISTLTSQQIS-SNKSSEFVGQTTTEYTTSGSVGFTTTLATQSG-SVP 671

Query: 400 DTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
            T++V  PTP  I+  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 672 GTVLVDVPTPSWITETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTE 722



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 397 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
           T++V  PTP  ++  ++S S+   +    P GT A   VV  P+ + V E
Sbjct: 817 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWVTE 866



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 397 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
           T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 781 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 830



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 397  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 889  TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 938



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 397  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 925  TVLVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTE 974



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 397  TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
            T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 961  TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWVTE 1010


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 391 IVACPTPEQISVFISSASLISHSEPVL 311
           I++ PTP   S+ ISS+S+IS S  +L
Sbjct: 624 ILSSPTPSTSSLMISSSSIISGSSSIL 650


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 397 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
           T++V  PTP  ++  ++S S+   +    P GT A   VV  P+ + V E
Sbjct: 680 TVLVDIPTPSWVTETVTSGSVEFTTTIATPVGTTAGTVVVDIPTPSWVTE 729



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 397 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPE 248
           T++V  PTP  ++  ++S S+   +    P GT A   +V  P+ + V E
Sbjct: 716 TVVVDIPTPSWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWVTE 765



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 397 TLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTS 257
           T++V  PTP  ++  ++S S+   +    P GT A   ++  P+ T+
Sbjct: 752 TVLVDIPTPSWVTETVTSGSVGFTTTIATPVGTTAGTVLIDVPTPTA 798


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 474 GLNKINSVSLLAKYSCIER 530
           G+NK +S+SLL+K+  +ER
Sbjct: 186 GINKSDSLSLLSKFGSLER 204


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 549 AFIRFCTSLTTTASCSGVAQGSD 617
           +FI++CT L  TA C+ ++  +D
Sbjct: 300 SFIKYCTKLEVTAGCTLISYIAD 322


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 310 PYGTKAKPSVV-RKPSVTSVPEKLEEKAT 227
           P+ T   P  + R+P   S+PEK  EKAT
Sbjct: 416 PHPTSTMPEALPREPLSFSLPEKAPEKAT 444


>SPBC4B4.06 |vps25||ESCRT II complex subunit
           Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 269 RFTDHTWLRLSAVWQHWLTMAYKASRR 349
           +  D+TW    A WQ W+ +  + +R+
Sbjct: 16  QLNDNTWHSQKAAWQMWILLWCRENRQ 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,261
Number of Sequences: 5004
Number of extensions: 46215
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)