Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1506
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077... 56 3e-08
07_03_1117 - 24096425-24097853,24097894-24098336 29 2.6
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 29 4.5
12_02_0668 + 21688853-21688933,21689043-21689081,21689597-216897... 28 6.0
07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723... 28 6.0
07_03_0732 + 21050941-21051811,21053676-21053720,21053931-210539... 28 7.9
04_04_1100 + 30894575-30895012,30896082-30897044 28 7.9
>08_02_0866 +
22006822-22006899,22006997-22007080,22007621-22007719,
22007864-22007908,22008170-22008265,22009150-22009227,
22009864-22009949,22010038-22010104,22010192-22010254,
22010332-22010433,22010559-22010663,22010748-22010840,
22011380-22011468,22012049-22012268,22012816-22012899,
22013221-22013337,22013399-22013473,22013589-22013675,
22013766-22013828,22014833-22014949,22015231-22015323,
22015794-22015919,22015992-22016092,22016917-22016996,
22017023-22017093,22017200-22017256,22017430-22017573
Length = 839
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = -3
Query: 622 LKSEPWATPEQLAVVVKEVQKRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFV 443
LK++ +A+P+++A +V++V I+ L + M+LYL N T ILFKPI+ N+V +
Sbjct: 672 LKTQAFASPDKVAELVQKVGTAIQQDLPKVMTMMRLYLQNPSTRLILFKPIKTNIVEAHI 731
Query: 442 QIEQLL 425
Q+ LL
Sbjct: 732 QLHSLL 737
>07_03_1117 - 24096425-24097853,24097894-24098336
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 475 PIRNNVV--GYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEPVLPYG 302
P+ VV G F ++ ++ G S + C T I + S + SH P LP+
Sbjct: 557 PLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHW 616
Query: 301 TKAKPS 284
T A+ S
Sbjct: 617 TPARRS 622
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 64 FLKNFLASNNFFRKTIKDILNVMKH 138
FLKN L + N FR +I L +M+H
Sbjct: 396 FLKNLLVAPNRFRPSISSSLGIMEH 420
>12_02_0668 +
21688853-21688933,21689043-21689081,21689597-21689794,
21690288-21690341,21690772-21690825,21691544-21691597,
21691694-21691765,21691860-21691949,21692132-21692188,
21692449-21692514
Length = 254
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 322 EPVLPYGTKAKPSVVRKPSVTSVPEKL 242
EP +P G +A PS+ RK + V EK+
Sbjct: 13 EPAVPAGEEAAPSLERKEELLPVEEKI 39
>07_01_0871 -
7230228-7230338,7231055-7231348,7231972-7232148,
7232513-7232551,7232734-7234057,7238145-7238189,
7238456-7238498,7238680-7238716,7239035-7239325,
7239634-7239685,7239690-7239773,7240064-7240137,
7240703-7241641
Length = 1169
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 385 ACPTPEQISVFISSASLISHSEPVLPYGTKAK 290
A P ++VF+ +SHS P+L Y T+A+
Sbjct: 272 AMPNVHTLAVFVMVYGYVSHSLPLLQYFTEAR 303
>07_03_0732 +
21050941-21051811,21053676-21053720,21053931-21053942,
21054056-21054067,21054429-21054554,21054727-21054857,
21054939-21055149,21055237-21055474,21055557-21055707,
21055810-21055895,21055928-21055976
Length = 643
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = -3
Query: 514 YLANKETEFILFKPIRNNVVGYFVQIEQLLVNA 416
Y+ NK + ILF P R+NV+ ++ +++ +VNA
Sbjct: 458 YMPNKSLDTILFDPDRSNVLDWWKRLK--IVNA 488
>04_04_1100 + 30894575-30895012,30896082-30897044
Length = 466
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 673 PCPCSLK-RLNPFTPIDQLKSEPWATPEQLAVVVKEVQKRIKAHLAPLQ 530
PCP +L RL F P+ + + P + PE A V + + A +A LQ
Sbjct: 206 PCPDALSDRL--FVPVSCVPAPPSSAPEAAAAAVNRIFRVAAADVAALQ 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,251
Number of Sequences: 37544
Number of extensions: 284220
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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