Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1506
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved oli...    35   0.046
AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.     35   0.046
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81489-14|CAN86572.1|  420|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z81087-2|CAN86636.1|  420|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AC024852-4|AAT81182.1|  794|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 3, isoform a
           protein.
          Length = 794

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = -3

Query: 598 PEQLAVVVKEVQ----KRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFVQIEQ 431
           P+  A V+K+V     + +      ++ +  LY+   ETE IL  P+R  V+  F ++  
Sbjct: 707 PKLAAGVLKDVSAVAYRNVGTKFTEIRAAYTLYIGVPETEEILLSPVRKRVIDIFTRVIS 766

Query: 430 LLVNAGYSYEDTLIVACPTPEQISVFIS 347
              +  Y  E   I   P  +Q+ + ++
Sbjct: 767 -FASKTYDAESLAIAGLPNVQQLILLLN 793


>AB212858-1|BAE66673.1|  792|Caenorhabditis elegans COGC-3 protein.
          Length = 792

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = -3

Query: 598 PEQLAVVVKEVQ----KRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFVQIEQ 431
           P+  A V+K+V     + +      ++ +  LY+   ETE IL  P+R  V+  F ++  
Sbjct: 705 PKLAAGVLKDVSAVAYRNVGTKFTEIRAAYTLYIGVPETEEILLSPVRKRVIDIFTRVIS 764

Query: 430 LLVNAGYSYEDTLIVACPTPEQISVFIS 347
              +  Y  E   I   P  +Q+ + ++
Sbjct: 765 -FASKTYDAESLAIAGLPNVQQLILLLN 791


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 453 PTTLFLIGLNKINSVSLLAKYSCIERCNGAR*AFIRFCTSLTTTASCSGVAQGSDFNWSI 632
           P+T+  +  ++ N  + +  Y C++  N A   F+  C+S  +T+SC      SDF  ++
Sbjct: 88  PSTIGYVECSQNNPTNCITGYQCVQSSNVAS-TFL-CCSSSISTSSCP-----SDFTPAV 140

Query: 633 GVKG 644
           G  G
Sbjct: 141 GSNG 144


>Z81489-14|CAN86572.1|  420|Caenorhabditis elegans Hypothetical
           protein F53E4.1b protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 147 MYVVGGKLRPSGQYHLLH 200
           MY+ GG+   SGQ+H +H
Sbjct: 208 MYIFGGRSDESGQFHTIH 225


>Z81087-2|CAN86636.1|  420|Caenorhabditis elegans Hypothetical
           protein F53E4.1b protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 147 MYVVGGKLRPSGQYHLLH 200
           MY+ GG+   SGQ+H +H
Sbjct: 208 MYIFGGRSDESGQFHTIH 225


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 406 YEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKAT 227
           YE   +   PTP        S ++ +  E  +   + A P+ + KPS T+ P  L+  + 
Sbjct: 284 YEKPTLTTEPTPVTTEKSTVSTTISTSLETTIMQASSASPTSI-KPSTTTEPSPLQASSK 342

Query: 226 AET 218
             T
Sbjct: 343 PAT 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,727
Number of Sequences: 27780
Number of extensions: 261000
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)