Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1506
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    63   2e-10
At2g07170.1 68415.m00821 expressed protein                             30   1.2  
At2g37790.1 68415.m04640 aldo/keto reductase family protein simi...    27   8.6  

>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/75 (42%), Positives = 47/75 (62%)
 Frame = -3

Query: 622 LKSEPWATPEQLAVVVKEVQKRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVVGYFV 443
           LK + +ATP+++  +V++V   I+  L P+   M+LYL N  T  ILFKPI+ N+V    
Sbjct: 691 LKEQAFATPDKVVELVQKVYAAIQQELLPILAKMKLYLQNPSTRTILFKPIKTNIVEAHT 750

Query: 442 QIEQLLVNAGYSYED 398
           Q+E LL  A YS E+
Sbjct: 751 QVESLL-KAEYSAEE 764


>At2g07170.1 68415.m00821 expressed protein
          Length = 893

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 628 DQLKSEPWATPEQLAVVVKEVQKRIKAHLAPLQRSMQLYLANKETEFILFKPIRNNVV 455
           D LK++ W T +  +V + E+    +  L PL+ S    L  +   F   KP+R++V+
Sbjct: 239 DALKNKDWTTRKAASVALMEIAATGEKFLGPLKASCICSL--ESCRFDKVKPVRDSVI 294


>At2g37790.1 68415.m04640 aldo/keto reductase family protein similar
           to chalcone reductase [Sesbania rostrata][GI:2792155],
           and aldose reductase ALDRXV4 [Xerophyta
           viscosa][GI:4539944],  [Hordeum vulgare][GI:728592]
          Length = 314

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 618 FNWSIGVKGLSLFSEHGQG 674
           FNWSI    LS FSE GQG
Sbjct: 270 FNWSIPEDMLSKFSEIGQG 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,912,609
Number of Sequences: 28952
Number of extensions: 233990
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)