Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1505
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    29   2.5  
03_06_0604 - 35006004-35008580                                         29   4.3  
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178...    28   7.6  

>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 461 ASTPDLLSSENQHTVSLNISPALSPLNTSILISDISPFPQPINRLP 598
           A++    SS+     S ++ PA + L TS  I   SP P P  +LP
Sbjct: 179 ATSSSSSSSDRSSGSSKSVKPAAAALLTSAAIDLFSPAPAPTTQLP 224


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 410 SSTCFLRENHFIVGYQNASTP 472
           S  CFL+ ++F+ GYQ+A+ P
Sbjct: 381 SGLCFLKVSNFVSGYQSAALP 401


>03_03_0277 +
           16116017-16117424,16117461-16117660,16117739-16117816,
           16118381-16118533,16118969-16119280,16119390-16119563,
           16120411-16120498,16120598-16120611
          Length = 808

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 323 NDVYENVFADDVHRANESITDENRNQNIPSSTC--FLRENH 439
           +D Y +  + ++H   +SIT  N+ +  P+  C   L++NH
Sbjct: 423 DDTYNSTNSTNLHILEKSITTNNKQKQQPAVMCIDILKKNH 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,166
Number of Sequences: 37544
Number of extensions: 302039
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)