Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1505
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    29   2.2  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    29   2.9  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   5.1  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    28   6.8  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    28   6.8  
U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    27   8.9  

>Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical
           protein F25H5.2 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 457 KCFHTRFTLVRKSTYRVPKYQPSFKPFKY 543
           K F   +T V K TY V K+QP+F P KY
Sbjct: 21  KTFDNVYTKV-KMTYLVHKHQPTFAPCKY 48


>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
            family protein 3 protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 563  ISPFPQPINRLPLPAEGHGEVCNRFL 640
            IS F + I  +PLPAE +G+V   FL
Sbjct: 965  ISAFAKIIGNVPLPAEAYGKVVEMFL 990


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 29  SFILLKKMIICIYLIYFSIKK*SYVSNILPV*IKRSKLFYFCTSE 163
           +F+ L  +I+C+ L Y  I    +   IL + I+R  LFYF +SE
Sbjct: 86  AFLNLSTLILCVCLFYLYIFDQVFHLIILLLAIQRFFLFYFPSSE 130


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 469 CGSILISNYKVIFSKKTSRGWYVLIPIFICNTFVCSVYIVCKDILINVVHF 317
           C  + I++YK    +   RGW+V  PI  C  FV ++ I   ++  NV+ F
Sbjct: 125 CFHVYITSYKYHKYRAFFRGWFV--PILNCLNFVLAL-IFLINLNFNVISF 172


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
           defective protein 27,isoform b protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
 Frame = +2

Query: 416 TCFLRENHFIVGYQNASTPDLLSSE---NQHTVSLNISPALSPLNTS--ILISDISPFPQ 580
           T  L  NH +   +NA   DLL  E     H     I  ALS LN +  IL +D+    Q
Sbjct: 277 TYTLSGNHMLDSQKNARVSDLLMDEAIIQLHRSGYKIDDALSELNANDIILTTDVDNMTQ 336


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 299 SRPCNSKMNDVYENVFADDVHRANESITDENRNQNI 406
           S PC+S +ND  +N  +D +  A +S T    N+ +
Sbjct: 48  SHPCSSSLNDNQQNTKSDGI-TAGKSTTQNTPNETV 82


>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 455 QNASTPDLLSSENQHTVSLNISPALSPLNTSILISDISPFPQP 583
           +   T DLL  E+  +++  I P  +  +TS  +  I P P+P
Sbjct: 342 ERRKTGDLLDLESAASIAFPIGPLATLFDTSSFVPPILPPPKP 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,339
Number of Sequences: 27780
Number of extensions: 295485
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)