Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1503
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   1.7  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   5.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.7  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.7  

>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 73  TGGASHSHAVTVRTRSPVHSVDTRLTFTSKDTYTRVVVSDI-SEVIMAD---NEWGYTCE 240
           + G+SH  +         H+  T LT  S DTYT    +D  ++V++ +   N    T  
Sbjct: 58  SSGSSHYISTIYPVNKTHHTEYTTLTDGSIDTYTITAKTDTGTDVVVVETSANTITTTLY 117

Query: 241 NGPATWIEKFPQARGTRQSPVDIV 312
           +G   +      A GT  + +++V
Sbjct: 118 SGSLEFTTTLDSANGTTPATIEVV 141


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 429 IAVFVDTPTVARIDDGTRMIDRVPPFQW 346
           I+V+ +TP++A +D  T  ID V  F+W
Sbjct: 331 ISVY-ETPSLALVDKKTIKIDGVQNFEW 357


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 491 ATGERSMGRAQNIQWTVARSPENSTWFTGTQASTTSFGEAA 613
           +TG++S   A +       +P  ST+  G+  ++ +FG+ A
Sbjct: 116 STGDKSKNTASSATGAATTNPSGSTFNFGSSNNSFNFGKPA 156


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 468 LQITTMALPLGSAQWGGLRTYSGRSLVLRR 557
           LQ   M LP G+ ++GGL  +   SL + +
Sbjct: 326 LQTLLMGLPAGACEFGGLIAFGFLSLFIHK 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,528
Number of Sequences: 5004
Number of extensions: 55396
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)