Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1503
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 58 7e-09
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 54 9e-08
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 54 9e-08
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 52 3e-07
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 52 4e-07
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 52 4e-07
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 48 6e-06
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 47 1e-05
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 46 2e-05
11_01_0329 + 2471015-2471075,2471152-2471432 32 0.42
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 29 3.9
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 5.2
07_03_0497 + 18777377-18777592,18777691-18778512 28 6.9
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721... 28 6.9
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 27 9.1
06_01_0142 + 1079053-1079700 27 9.1
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 57.6 bits (133), Expect = 7e-09
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Frame = +1
Query: 214 DNEWGYT--CENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNH 375
D+++GY GP W P+ + G QSP+++ + L L + Y N
Sbjct: 29 DDQFGYIPGTPRGPENWGSLKPEWATCSSGEMQSPINLGLLDLTLAPGLGDLNYTYR-NA 87
Query: 376 PRSIVNPGYCWRVDENGYDSELKGGPL--NNDVYKLQQWHCHWGALNGEGSEHTVDGRSF 549
++VN G+ V +G D G L N Y+L+Q HW A SEH VDGR +
Sbjct: 88 NATVVNRGHDIMVRFDGGDDAAAAGGLVINGTAYRLRQ--VHWHA----PSEHAVDGRRY 141
Query: 550 SGELHLVHWNT 582
ELH+VH NT
Sbjct: 142 DMELHMVHLNT 152
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +1
Query: 244 GPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWR 411
GP W P+ + G QSP+++ + L L + Y N S+VN G+
Sbjct: 44 GPQNWGSLKPEWATCSSGKMQSPINLGLLDLTLAPGLGNLNYTYK-NANASVVNRGHDIM 102
Query: 412 VDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWN 579
V +G LK +N Y+L+Q H H SEHT+DGR + ELH+VH N
Sbjct: 103 VRFDGDAGSLK---INGTAYQLRQMHWH------TPSEHTIDGRRYDMELHMVHLN 149
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Frame = +1
Query: 244 GPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWR 411
GP W P+ + G QSP+++ + L L + Y N S+VN G+
Sbjct: 45 GPQNWGSLKPEWATCSSGKMQSPINLGLLDLTLAPGLGNLNYTYQ-NANASVVNRGHDIM 103
Query: 412 VDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWN 579
V +G LK +N Y+L+Q H H SEHT+DGR + ELH+VH N
Sbjct: 104 VRFDGDAGSLK---INGTAYQLRQMHWH------TPSEHTIDGRRYDMELHMVHLN 150
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 52.4 bits (120), Expect = 3e-07
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = +1
Query: 238 ENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYC 405
E GP W + P+ G QSP+D+ RVK L L Y SIVN G+
Sbjct: 43 EKGPEHWGKLKPEWAQCGAGEMQSPIDLSHERVKLVRDLGYLDDSYRAAEA-SIVNRGHD 101
Query: 406 WRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTS 585
V +D + +N Y L+Q H H +EH+VDGR + ELH+VH +
Sbjct: 102 IMVR---FDGDAGSVVINGTAYYLRQLHWH------SPTEHSVDGRRYDMELHMVHESAE 152
Query: 586 K 588
K
Sbjct: 153 K 153
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 52.0 bits (119), Expect = 4e-07
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Frame = +1
Query: 214 DNEWGYT--CENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNH 375
+ ++GY ENGP W P+ G QSP+D+ R+ +L L + Y +
Sbjct: 32 ERKFGYVPGTENGPGNWSRLDPRWAKCNTGNMQSPIDLSHERLMR--NLGYLDYSY-LPA 88
Query: 376 PRSIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSG 555
S+VN G+ V G + +N YKL+Q H H SEHTV+GR +
Sbjct: 89 EASMVNRGHDIEVKFMGNAGRVV---INGKAYKLKQLHWH------TPSEHTVNGRRYDM 139
Query: 556 ELHLVH 573
ELHLVH
Sbjct: 140 ELHLVH 145
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 52.0 bits (119), Expect = 4e-07
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +1
Query: 211 ADNEWGYTCENGPATWIEKFPQ----ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHP 378
+D +GY+ GP W P ++GT QSP++I+ L PL+ Y+ +
Sbjct: 26 SDVVFGYSGSTGPEHWGSLSPNFTTCSKGTYQSPINILKDDAVYNPKLEPLEMDYTAANT 85
Query: 379 RSIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGE 558
+IV+ + + N +K ++ YKL+Q H H SEHT++G+ F+ E
Sbjct: 86 -TIVDNVFNIALRYNDTAGTVK---VDGKKYKLRQLHWH------SPSEHTINGQRFAVE 135
Query: 559 LHLVH 573
LH+VH
Sbjct: 136 LHMVH 140
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 48.0 bits (109), Expect = 6e-06
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +1
Query: 151 FTSKDTYTRVVVSDISEVIMADNEWGYTCE-NGPATWIEKFPQ----ARGTRQSPVDIVT 315
F+S T TR +D E M+ +GY + GPA W + G +QSP+DI T
Sbjct: 35 FSSAITPTR---ADHVEGHMSHEMFGYENDATGPAKWGSLHKEWAVCGDGKKQSPIDITT 91
Query: 316 SRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCH 495
V+ PL Y +I N G+ + + +S+L + Y L+Q H H
Sbjct: 92 --VEPQKVKEPLMQAYKAG-ATTIQNRGHDYMLKWKDGNSKLT---VQGKEYTLKQVHWH 145
Query: 496 WGALNGEGSEHTVDGRSFSGELHLVHWNTS 585
E SEHT++G F E+H+VH + S
Sbjct: 146 ------EPSEHTINGTRFDAEMHMVHEDPS 169
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 47.2 bits (107), Expect = 1e-05
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Frame = +1
Query: 241 NGPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCW 408
+GP+ W + P+ R G QSP+DI T V + L L Y+ + +IVN G
Sbjct: 218 DGPSNWGKLSPEYRMCGEGRSQSPIDINTKTVVPRSDLDTLDRNYNAVNA-TIVNNGKDI 276
Query: 409 RVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 573
+ +G E+ + Y+ Q HW A SEHT++GR F ELHLVH
Sbjct: 277 TMKFHG---EVGQVIIAGKPYRFQA--IHWHA----PSEHTINGRRFPLELHLVH 322
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Frame = +1
Query: 220 EWGYTCENGPATW---IEKFPQ-ARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSI 387
++GYT GP W F + + G +QSP+DI T+ + ++ PL Y+ + +
Sbjct: 30 KFGYTGSIGPDFWGNLSADFTRCSNGKQQSPIDIDTNNLVHELNMEPLHRNYTAANATLV 89
Query: 388 VNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHL 567
N + V Y+ +N Y L+Q H H SEHT++G F ELH+
Sbjct: 90 DN---IFNVALR-YEEAAGVLSINGVKYTLKQMHWH------SPSEHTINGFRFPLELHM 139
Query: 568 VHWN 579
VH N
Sbjct: 140 VHTN 143
>11_01_0329 + 2471015-2471075,2471152-2471432
Length = 113
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = +1
Query: 220 EWGYTCEN--GPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPR 381
++GY + GP W + P + G +QSP+DIVT + S +L L Y+ +
Sbjct: 40 DYGYAAGSKLGPENWGKLSPAYKLCGDGKKQSPIDIVTKQAISNPNLDSLNRTYTAS-DG 98
Query: 382 SIVNPG 399
++VN G
Sbjct: 99 TLVNNG 104
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 356 GGTLSIILVPSSILATVGVSTKTAMIQN*KVDLSTMMFTNYNNGIATGERSMGRAQNIQW 535
G +I +P S VS + Q L+ + Y N I G ++ G + +
Sbjct: 95 GANYRLIDIPVSNCLNSNVSKIYVLTQFNSASLNRHLSRAYGNNIG-GYKNEGFVEVL-- 151
Query: 536 TVARSPENSTWFTGT 580
+SPEN WF GT
Sbjct: 152 AAQQSPENPNWFQGT 166
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 490 CHWGALNGEGSEHTVDGRSFSGELHLVHWNTSK 588
C A + +GS G S GE HLV WN S+
Sbjct: 548 CTTMAYSADGSRLFSCGTSKDGESHLVEWNESE 580
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 273 SSTWHST-KSRRYCDFSRQKWSFPAAIEMAVLCQSSSFHRQSWLL 404
S WH T K R+Y +F ++++ + LC R+ W+L
Sbjct: 202 SQQWHLTWKHRKYEEFYEEEYASIGTWHLLELCDRLHMVRREWVL 246
>06_01_0934 -
7212408-7212794,7212887-7213416,7214192-7214302,
7214322-7214811
Length = 505
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 520 SPPH*ALPSGNAIVVICKHHC*EVHLLILNH 428
+P H A+ GNAI++ C V+L I+NH
Sbjct: 326 TPLHLAVKHGNAIIISCLMMNTRVNLSIINH 356
>08_02_0546 - 18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 253 TWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDE 420
T IE+F QA + S KSG +PP+ +S ++P +I+ C+R DE
Sbjct: 911 TLIERFKQAIS------ESCGSTAKSGFPMPPVPAHWSPSNPNTILRV-LCYRNDE 959
>06_01_0142 + 1079053-1079700
Length = 215
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 295 SPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGYDSELKGGPLNND 465
SP +I S K+ + PL +N + NPG+ V+ G+D +L P + +
Sbjct: 54 SPGEIDFSVTKASRMILPLDGGVELNLTVAAANPGWRAAVEYRGFDVKLHYTPFDGE 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,174,712
Number of Sequences: 37544
Number of extensions: 417285
Number of successful extensions: 1243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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