Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1503
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 66 1e-11
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 64 6e-11
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 61 5e-10
AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic anhy... 56 3e-08
U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydr... 49 2e-06
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 42 5e-04
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 29 2.7
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 3.5
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 66.5 bits (155), Expect = 1e-11
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Frame = +1
Query: 262 EKFPQARGTRQSPVDIVTSRVKSGASL---PPLKWRYSVNHPRSIV--NPGYCWRVDENG 426
+KF +A RQSP+DIV V + L Y ++ G+ V N
Sbjct: 42 KKFKKAAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFLVNVKRN- 100
Query: 427 YDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTS 585
+ L L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNTS
Sbjct: 101 CGTFLTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS 153
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 64.5 bits (150), Expect = 6e-11
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Frame = +1
Query: 223 WGYTCEN--GPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHP--RSIV 390
W Y ++ GP W G QSP++I V+ + +K+ + +HP IV
Sbjct: 5 WSYCDDDECGPNRW------PTGQHQSPINIDLGEVERKDTHDGIKF-VNYDHPIQGDIV 57
Query: 391 NPGYCWRV--DENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELH 564
N G+ ++ + E+ GG L+ VY+L Q+H HWG + EGSEHT+ G + ELH
Sbjct: 58 NNGHSVQMTPELRSEHPEIYGGGLDQ-VYRLVQYHFHWGENDNEGSEHTLGGLRYPAELH 116
Query: 565 LVHWNTSKYHKL 600
LVH KL
Sbjct: 117 LVHQGVEDPGKL 128
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 61.7 bits (143), Expect = 4e-10
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Frame = +1
Query: 277 ARGTRQSPVDIVTSRVKSGASL---PPLKWRYSVNHPRSIV--NPGYCWRVDENGYDSEL 441
A RQSP+DIV V + L Y ++ G+ V N + L
Sbjct: 2 AAAQRQSPIDIVPQHVCCDTDVCKADALNIDYKSGDCCDVLVSEGGFLVNVKRN-CGTFL 60
Query: 442 KGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTS 585
L + + L Q+H HWG+ + EGSEH +DG+ SGE+H V WNTS
Sbjct: 61 TANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS 108
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 61.3 bits (142), Expect = 5e-10
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Frame = +1
Query: 211 ADNEWGYTCENGPATWIEKFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIV 390
+D+ WGY NGP TW K +QSP+DI V Y ++ +
Sbjct: 24 SDHGWGYDENNGPDTWQGKCQNH--LKQSPIDIRAPDVDYALLHRMHFLNYDMDGKIELS 81
Query: 391 NPGYCWRVDENGYDS------ELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFS 552
N G + G++S ++GG L + YKL Q+H HWG + GSEH + +
Sbjct: 82 NTGRT--LFAGGFESWQHKQPMIQGGGLKHR-YKLAQFHLHWGQNDAVGSEHAMGSLHYP 138
Query: 553 GELHLVH 573
ELHLVH
Sbjct: 139 AELHLVH 145
>AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic
anhydrase protein 6 protein.
Length = 319
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 283 GTRQSPVDIVTSRVKSGASLPPLKWR--YSVNHPRSIVNPGYCWRVDENGYDSELKGGPL 456
G QSP+DIV G L + Y VN G + G SEL L
Sbjct: 65 GRTQSPIDIVPVITAFGEHLQNAHFEVTYESTGEFKAVNDGNSIWLMREGNSSELAISFL 124
Query: 457 NNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNT 582
+ Y L + HW GSEHT+ G ++GE+HL+H NT
Sbjct: 125 PEEQYHLDAVNFHWATEPMNGSEHTIGGVGYAGEMHLIHRNT 166
>U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydrase
protein 1 protein.
Length = 365
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 388 VNPGYCWRVDENGYDSE-----LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFS 552
VN G RV GY S+ + GPL Y++Q+ H G N GSEHT++GR F
Sbjct: 152 VNTGQMVRV-RIGYSSKKPSVNITSGPLYGYRYRVQRIDFHMGRKNENGSEHTINGRRFP 210
Query: 553 GELHLVHWNTSKY 591
E+ LV +NT Y
Sbjct: 211 MEVQLVAYNTDLY 223
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +1
Query: 178 VVVSDISEVIMADN-EWGYTCE--NGPATW--IEK--FPQARGTRQSPVDIVTSRVKSGA 336
++ IS + + N +W Y + GP W +EK + +G QSP+DI R+ A
Sbjct: 14 ILTCHISPLKSSQNYQWSYDSDVFGGPHFWGLVEKDWWMCKKGRLQSPIDIQPDRLLFDA 73
Query: 337 SLPPLKW 357
S+ P+ +
Sbjct: 74 SVKPVSY 80
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 41.5 bits (93), Expect = 5e-04
Identities = 43/131 (32%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Frame = +1
Query: 229 YTCENGPATWIEKFPQAR----GTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPRSIVNP 396
Y C GP W R G QSPV+I S++ L P+ ++ N
Sbjct: 11 YPCVIGPDFWGLLHGDWRMCTAGQMQSPVNIDPSQLLYDPHLMPINIEGNIVEA-VFENT 69
Query: 397 GYCWRVD----ENGYDSELKGGPLNNDVYKLQQWHCHWG-ALNGE-GSEHTVDGRSFSGE 558
G V N + GGP YKL Q H+G A GE GSEHTVD F E
Sbjct: 70 GQLPVVTVKDLPNRPTINITGGPTMPYRYKLHQISVHFGRADEGEKGSEHTVDRVRFPAE 129
Query: 559 LHLVHWNTSKY 591
+ L+ +N++ Y
Sbjct: 130 IQLLAYNSALY 140
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 343 PPLKWRYSVNHPRSIVNPGYCWRVDENGY 429
PP+ ++V P S VN GYC + NGY
Sbjct: 104 PPIYTNFAVGEPFS-VNVGYCITIGMNGY 131
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 316 SRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGY 429
SR SG+ PP K R S + GYC R D+ Y
Sbjct: 192 SRSSSGSRTPPYKSRSSRRRCKDFEERGYCIRGDQCPY 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.132 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,201
Number of Sequences: 27780
Number of extensions: 328007
Number of successful extensions: 913
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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