Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1503
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.26 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.26 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 LQQWHCHWGALNGEGSEHTVDG 540
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 LQQWHCHWGALNGEGSEHTVDG 540
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 355 WRYSVNHPR 381
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 355 WRYSVNHPR 381
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 SPVDIVTSRVKSGASLPPLKWRYSVN 372
           S + + T   KS ASLPP+ +  +V+
Sbjct: 283 SLLTLSTQHAKSQASLPPVSYLKAVD 308


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -1

Query: 545 ERPSTVCSEPSPLSAPQWQCHC 480
           E+P+ +C        P   CHC
Sbjct: 228 EQPTFLCKGDGKWYLPSGGCHC 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,603
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)